RetrogeneDB ID:

retro_ttru_1445

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_113442:57123..57690(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFB5
Ensembl ID:ENSTTRG00000008910
Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa [Source:HGNC Symbol;Acc:7700]


Retrocopy-Parental alignment summary:






>retro_ttru_1445
ATGGCGGCCATGAGTTTATTACAGCGGGCTTCGGTCTCTGCAGTGGCCGCTCTTTCTGGCCGCCGCCTTGACACTAGACT
TGTATTCGGGGGCTTCCTCACCCGTGACTTTCCGAAGACTGTCGCTCCTGTGCGACACAGTGGAGACCATGGGAAAAGAC
TGTTTATCATCAAGCCTTCTGGATTCTATGACAGACGTTTTTTGAAATTAATGAAATTCTACATTTTGTTGACTGGGATT
CCAGTAGCAATTGGCATAACTCTGGTGAATGTATTCATTGGTGAAGCTGAGTTAGCAGAAATTCCAGAAGGCTATACCCC
AGAGCACTGGGAATATTTCAAGCATCCTATATCAAGATGGATTGCCCGAACTTTCTTTGATAGTCCTGAAAAGAATTATG
AAAGAACAATGGCTGTCCTTCAAGTTGAAGCTGAAAAAGCTGAATTACGGTTAAAGGAGCTGGAAGTACGAAGTCTAATG
CGTGCAAGAGGCGATGGTCCCTGATATCAGTATCTGACCATTGATAAGACACTTATTGATCATTCTCCAAAAGCAACTCC
TGACAAC

ORF - retro_ttru_1445 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.47 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAMSLLQRASVSAVAALSGRRLDTRLVFGGFLTRDFPKTVAPVRHSGDHGKRLFIIKPSGFYDRRFLKL
MAAMSLLQRASVSAVAALSGRRLDTRLVFGGFLTRDFPKTVAPVRHSGDHGKRLFIIKPSGFYDRRFLKL
RetrocopyMAAMSLLQRASVSAVAALSGRRLDTRLVFGGFLTRDFPKTVAPVRHSGDHGKRLFIIKPSGFYDRRFLKL
ParentalMKFYILLTGIPVAIGITLVNVFIGEAELAEIPEGYTPEHWEYFKHPISRWIARTFFDSPEKNYERTMAVL
MKFYILLTGIPVAIGITLVNVFIGEAELAEIPEGYTPEHWEYFKHPISRWIARTFFDSPEKNYERTMAVL
RetrocopyMKFYILLTGIPVAIGITLVNVFIGEAELAEIPEGYTPEHWEYFKHPISRWIARTFFDSPEKNYERTMAVL
ParentalQVEAEKAELRLKELEVRSLMRARGDGPWYQYLTIDKTLIDHSPKATPDN
QVEAEKAELRLKELEVRSLMRARGDGP.YQYLTIDKTLIDHSPKATPDN
RetrocopyQVEAEKAELRLKELEVRSLMRARGDGP*YQYLTIDKTLIDHSPKATPDN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1445 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1445 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000026841 retrocopy
Equus caballus ENSECAG000000006821 retrocopy
Echinops telfairi ENSETEG000000193631 retrocopy
Homo sapiens ENSG000001365212 retrocopies
Macropus eugenii ENSMEUG000000141661 retrocopy
Myotis lucifugus ENSMLUG000000009991 retrocopy
Macaca mulatta ENSMMUG000000097461 retrocopy
Monodelphis domestica ENSMODG000000213001 retrocopy
Nomascus leucogenys ENSNLEG000000058422 retrocopies
Pongo abelii ENSPPYG000000144932 retrocopies
Pan troglodytes ENSPTRG000000156491 retrocopy
Pteropus vampyrus ENSPVAG000000042861 retrocopy
Sorex araneus ENSSARG000000069181 retrocopy
Sus scrofa ENSSSCG000000117641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000105571 retrocopy
Tursiops truncatus ENSTTRG00000008910 3 retrocopies
retro_ttru_1445 , retro_ttru_1719, retro_ttru_1755,



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