RetrogeneDB ID:

retro_ttru_1454

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_113591:41651..42012(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000008821
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1454
AAAACCTTCAAACAGCACCAAACCTTCGAACAAAGAGTAGAAGATGGCCTACTTAACCTGAGAGCAGCATCCTACCAAAA
TCCCAGTAATAATAGAACAATACAAAGGTGAGAAGCAGCTTCCGGTCCTGGATAAAACAAAGTTCTTGGTGTCTGATCAT
GTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGTGCTTACAGCTCAACGCTAACCAAGTCTTCCTGTTAGTGAATGG
GCATAGCATGGTGAGTGTGTCCACGCTGATTTGTGAAGTGTATTAAAGTGAGAAGGATGAAGATGGATTCCTGTGTATGG
TATACACCTCTCAGGAGACTTTTGGAAGGAAATTTCCTGTG

ORF - retro_ttru_1454 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.43 %
Parental protein coverage: 96.8 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKTFKQRRTFEQRVED-VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQL
KTFKQ..TFEQRVED...L..EQHPTKIPVIIE.YKGEKQLPVLDKTKFLV.DHVNMSELIKIIRR.LQL
RetrocopyKTFKQHQTFEQRVED>AYLT*EQHPTKIPVIIEQYKGEKQLPVLDKTKFLVSDHVNMSELIKIIRRCLQL
ParentalNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGMKLSV
NANQ..FLLVNGHSMVSVST.ICEVY.SEKDEDGFL.MVY.SQETFG.K..V
RetrocopyNANQV-FLLVNGHSMVSVSTLICEVY*SEKDEDGFLCMVYTSQETFGRKFPV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1454 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1454 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 31 parental genes, and 97 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000182542 retrocopies
Bos taurus ENSBTAG000000116321 retrocopy
Canis familiaris ENSCAFG000000199091 retrocopy
Choloepus hoffmanni ENSCHOG000000120907 retrocopies
Callithrix jacchus ENSCJAG000000044733 retrocopies
Cavia porcellus ENSCPOG000000239221 retrocopy
Dasypus novemcinctus ENSDNOG000000102287 retrocopies
Dipodomys ordii ENSDORG000000138621 retrocopy
Echinops telfairi ENSETEG000000151892 retrocopies
Felis catus ENSFCAG000000019384 retrocopies
Homo sapiens ENSG000001409413 retrocopies
Loxodonta africana ENSLAFG000000233643 retrocopies
Microcebus murinus ENSMICG000000073562 retrocopies
Myotis lucifugus ENSMLUG000000155961 retrocopy
Macaca mulatta ENSMMUG000000176131 retrocopy
Mus musculus ENSMUSG000000318124 retrocopies
Nomascus leucogenys ENSNLEG000000115114 retrocopies
Oryctolagus cuniculus ENSOCUG000000229704 retrocopies
Otolemur garnettii ENSOGAG000000042563 retrocopies
Ochotona princeps ENSOPRG000000154614 retrocopies
Pongo abelii ENSPPYG000000076287 retrocopies
Pan troglodytes ENSPTRG000000084453 retrocopies
Pteropus vampyrus ENSPVAG000000168581 retrocopy
Rattus norvegicus ENSRNOG000000179055 retrocopies
Sarcophilus harrisii ENSSHAG000000170741 retrocopy
Sus scrofa ENSSSCG000000026552 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000148262 retrocopies
Tupaia belangeri ENSTBEG0000000116511 retrocopies
Tursiops truncatus ENSTTRG00000008821 2 retrocopies
retro_ttru_1336, retro_ttru_1454 ,
Tursiops truncatus ENSTTRG000000090993 retrocopies
Vicugna pacos ENSVPAG000000100652 retrocopies



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