RetrogeneDB ID:

retro_ttru_1525

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_115303:53927..54455(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL11
Ensembl ID:ENSTTRG00000016115
Aliases:None
Description:ribosomal protein L11 [Source:HGNC Symbol;Acc:10301]


Retrocopy-Parental alignment summary:






>retro_ttru_1525
CAGGATCAAGGGGAGAAGGAGAACCCCATGCGGGAACTTCGCATCCGCAAGCTCTGCCTCAACATCTGCGTGGGGGAGAG
TGGAGACAGGCTGACCCGGGCAGCCAAGGTGCTGGAGCAGCTCACAGGCCAGACCCCTGTGTTCTCCAAAGCTAGATACA
CCATCAGATCCTTTGGCATCAGAAGAAATGAAAAAATTGCCGTCCATTGCGCAGTCCGTGGGGCCAAGGCAGAAGAAATC
CTGGAGAAAGGTCTGAAGGTGCGAGAGTATGAGTTAAGAAAAAATAACTTCTCAGACACTGGGAACTTTGGATTTGGGAT
CCAAGAACACATCGATCTGGGGATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTGTGTGGTGCTGGGTA
GGCCAGGTTTCAGCATCGTAGACAAGAAGCACAGGACAGGCTGCATTGGGGCCAAACTCAGAATCAGCAAAGAGGAGGCC
ATGTGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAA

ORF - retro_ttru_1525 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.02 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHC
QDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYT.RSFGIRRNEKIAVHC
RetrocopyQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTIRSFGIRRNEKIAVHC
ParentalTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA
.VRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDF.VVLGRPGFSI.
RetrocopyAVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFCVVLGRPGFSIV
ParentalDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
DKK.RTGCIGAK.RISKEEAM.WFQQKYDGIILPGK
RetrocopyDKKHRTGCIGAKLRISKEEAMCWFQQKYDGIILPGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1525 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1525 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 53 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000050581 retrocopy
Ailuropoda melanoleuca ENSAMEG000000097043 retrocopies
Canis familiaris ENSCAFG000000132322 retrocopies
Cavia porcellus ENSCPOG000000084322 retrocopies
Equus caballus ENSECAG000000211363 retrocopies
Felis catus ENSFCAG000000286512 retrocopies
Gorilla gorilla ENSGGOG000000146286 retrocopies
Macropus eugenii ENSMEUG000000137383 retrocopies
Myotis lucifugus ENSMLUG000000088683 retrocopies
Macaca mulatta ENSMMUG000000024453 retrocopies
Monodelphis domestica ENSMODG000000128281 retrocopy
Mus musculus ENSMUSG000000592913 retrocopies
Ornithorhynchus anatinus ENSOANG000000003211 retrocopy
Otolemur garnettii ENSOGAG000000327416 retrocopies
Rattus norvegicus ENSRNOG000000262609 retrocopies
Sarcophilus harrisii ENSSHAG000000067671 retrocopy
Tursiops truncatus ENSTTRG00000016115 4 retrocopies



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