RetrogeneDB ID: retro_ttru_1526

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_115303:55143..55625(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF5A
• Ensembl ID: ENSTTRG00000009783
• Aliases: None
• Description: eukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:3300]

Sequence

>retro_ttru_1526
CTGGAATCGAAGCCTCTTAAAATGGCAGATGATTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACCTTCCCAAT
GCAGCGCTCAGCTTTACGTAAGAATGTCTTTGTGGTGCCCAAAGGCCGGCCATGTAAGATTGTGGAGATGTCAGCCTCCA
AGACGGGCCAGCACGGCCATGCCAAGGTCCATCTGGTTGGTCTTGACATCTTTACTGGGAAGAAATATGAAGATATCTGC
CCATCAACTCATAATATGGATGTCCCCAGCATCAAAAGGAACGATTTCCAGCTGATTGCATCCAGAATGGGTATCTATCA
CTGCTCCAAGACAGCGGGGAGGTGCGAGAGGACCTCCGTCTGCCTGAGGGAGATCCTGGCAAGGAGATTGAGCAGAAGTA
CGACGGTGGAGAAGAGATACTGATCACGGTGCTGTCTGCCACGACAGAGGACGCAGCTGCTGCAGTCAAGGCCATGGCCA
AA

Alignment

ORF - retro_ttru_1526 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.12 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LESKPLKMADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDI
          LESKPLKMADDLDFETGDAGASATFPMQ.SALRKN.FVV.KGRPCKIVEMS.SKTG.HGHAKVHLVG.DI
Retrocopy LESKPLKMADDLDFETGDAGASATFPMQRSALRKNVFVVPKGRPCKIVEMSASKTGQHGHAKVHLVGLDI

Parental  FTGKKYEDICPSTHNMDVPNIKRNDFQLIG-IQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE
          FTGKKYEDICPSTHNMDVP.IKRNDFQLI..IQ.GYLSLLQDSGEVREDLRLPEGD.GKEIEQKYD.GEE
Retrocopy FTGKKYEDICPSTHNMDVPSIKRNDFQLIA<IQNGYLSLLQDSGEVREDLRLPEGDPGKEIEQKYDGGEE

Parental  ILITVLSAMTEEAAVAIKAMAK
          ILITVLSA.TE.AA.A.KAMAK
Retrocopy ILITVLSATTEDAAAAVKAMAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1526 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1526 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132507	3 retrocopies	retro_hsap_1788, retro_hsap_2004, retro_hsap_9,
Gorilla gorilla	ENSGGOG00000012032	2 retrocopies	retro_ggor_1448, retro_ggor_159,
Monodelphis domestica	ENSMODG00000006652	2 retrocopies	retro_mdom_1641, retro_mdom_190,
Otolemur garnettii	ENSOGAG00000014230	1 retrocopy	retro_ogar_2414,
Pan troglodytes	ENSPTRG00000008674	3 retrocopies	retro_ptro_1198, retro_ptro_442, retro_ptro_504,
Sus scrofa	ENSSSCG00000017939	1 retrocopy	retro_sscr_1204,
Tursiops truncatus	ENSTTRG00000009783	1 retrocopy	retro_ttru_1526 ,