RetrogeneDB ID: | retro_ttru_1530 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_115398:58423..58780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSTTRG00000000871 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854] |
Percent Identity: | 70.73 % |
Parental protein coverage: | 50.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNP |
VFYLKM.......LA.V...DD.KQTIDNSQGAYQ...DI..KEMQ.T.PI.LGLAL.FS..Y.EILNNP | |
Retrocopy | VFYLKMETTSSTSLA*V---DDQKQTIDNSQGAYQKVLDINMKEMQSTRPIHLGLALSFSILYSEILNNP |
Parental | ELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECD |
EL..TLAKT.FDEAI.ELD.LNEDSY....LIMQ.LRDNLTLWTSD.AGEE.D | |
Retrocopy | ELSYTLAKTTFDEAIIELDALNEDSYR-NILIMQ*LRDNLTLWTSDNAGEESD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000004925 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Felis catus | ENSFCAG00000007854 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Mus musculus | ENSMUSG00000076432 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000547 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000000871 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000007615 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015906 | 4 retrocopies |