RetrogeneDB ID:

retro_ttru_1535

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_115617:6038..6444(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL27
Ensembl ID:ENSTTRG00000011739
Aliases:None
Description:ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]


Retrocopy-Parental alignment summary:






>retro_ttru_1535
ATGGGCAAGTTCATGAAACCCGGGAAGGTGGTGCTGGTCCTGGCCGGTCGCTACTCTGGACGCAAAGCGGTCATCGTAAA
GAACATTGATGATGGCACCACAGACCGACCCTACAGGCATGCTCTGGTGGCTGGAATTGATCACTATCCCCGCAAAGTGA
CAGCTGCCATGGGCAAGAAGAAAATTGCCAGGAGGTCAAAGATCAAGTCTTTTGTGAAAGTTTATAATTATAATCACCTC
ATGCCTACGTGGTACTCTGTGGATATCCCCTTGGACAAAACTGTTGTCAACAAGGATGTCTTCAGAGACCTGCTCTCAAA
CACAAGGCCCGACGAGAGGCCAAGGTCAAGTTGAGGAGAGATACAAGACTGGCAAGAACAAATGGTTCTTTCAGAAGCTG
CGGTTT

ORF - retro_ttru_1535 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.48 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGT.DRPY.HALVAGID.YPRKVTAAMGKKKIA.RSKIKS
RetrocopyMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTTDRPYRHALVAGIDHYPRKVTAAMGKKKIARRSKIKS
ParentalFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRD-PALKRKARREAKVKF-EERYKTGKNKWFFQKLRF
FVKVYNYNHLMPT.YSVDIPLDKTVVNKDVFRD.PALK.KARREAKVK..EERYKTGKNKWFFQKLRF
RetrocopyFVKVYNYNHLMPTWYSVDIPLDKTVVNKDVFRD<PALKHKARREAKVKL<EERYKTGKNKWFFQKLRF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1535 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1535 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000002003 retrocopies
Bos taurus ENSBTAG000000174416 retrocopies
Canis familiaris ENSCAFG000000146306 retrocopies
Callithrix jacchus ENSCJAG000000130679 retrocopies
Equus caballus ENSECAG000000075001 retrocopy
Felis catus ENSFCAG000000131426 retrocopies
Gorilla gorilla ENSGGOG000000260396 retrocopies
Loxodonta africana ENSLAFG000000142203 retrocopies
Myotis lucifugus ENSMLUG000000041191 retrocopy
Macaca mulatta ENSMMUG000000080907 retrocopies
Monodelphis domestica ENSMODG000000151281 retrocopy
Mustela putorius furoENSMPUG0000000991311 retrocopies
Mus musculus ENSMUSG000000633162 retrocopies
Nomascus leucogenys ENSNLEG000000119012 retrocopies
Oryctolagus cuniculus ENSOCUG000000038721 retrocopy
Otolemur garnettii ENSOGAG0000000394014 retrocopies
Rattus norvegicus ENSRNOG000000206748 retrocopies
Sorex araneus ENSSARG0000001113110 retrocopies
Sarcophilus harrisii ENSSHAG000000120424 retrocopies
Sus scrofa ENSSSCG000000255075 retrocopies
Tursiops truncatus ENSTTRG00000011739 2 retrocopies
retro_ttru_1049, retro_ttru_1535 ,
Vicugna pacos ENSVPAG000000025741 retrocopy



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