RetrogeneDB ID: | retro_ttru_1544 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_115674:15843..16517(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1G | ||
Ensembl ID: | ENSTTRG00000002459 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
Percent Identity: | 77.19 % |
Parental protein coverage: | 52.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | EKMAQFDAKKFAESQPKKDTPRKEKASREEKQKPQAERKEEKKAAAPAPEEELDECEQALAAEPKAKDPF |
EKMAQFDAK.FAES.PKKDTPRKEKAS.EEKQKPQAE.KEE.....P.P...................P. | |
Retrocopy | EKMAQFDAKTFAES*PKKDTPRKEKAS*EEKQKPQAEWKEED--SCPCPRRSWMNVRRQRLLSRRPRTPL |
Parental | AHLPK-STFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRL |
...P..STFVLDEFKRK.SNEDTLS.ALPYF.EHFDKDGWSLWYSEYRFPEELTQTFMSC.LI.GMFQRL | |
Retrocopy | LPCPR<STFVLDEFKRKHSNEDTLSAALPYFGEHFDKDGWSLWYSEYRFPEELTQTFMSCDLIPGMFQRL |
Parental | DKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFSW |
DKL.KNAFASVILFGTNNSSSISGV.VFR.QELAFPLSPDWQVDYESYT..KLDPSS...Q.LV.EYFSW | |
Retrocopy | DKLGKNAFASVILFGTNNSSSISGV*VFRDQELAFPLSPDWQVDYESYT*QKLDPSSKDIQPLVQEYFSW |
Parental | DGAFQHVGKAFNQGKIFK |
DG.FQH.GKAFNQGKIFK | |
Retrocopy | DGVFQHAGKAFNQGKIFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011843 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015834 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000018949 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000014700 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000342 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007691 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003528 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000827 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014563 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003768 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003440 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020075 | 8 retrocopies | |
Sus scrofa | ENSSSCG00000013064 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002459 | 3 retrocopies |
retro_ttru_1082, retro_ttru_1544 , retro_ttru_1603,
|