RetrogeneDB ID:

retro_ttru_1563

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_116386:164728..165076(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GABARAPL1
Ensembl ID:ENSTTRG00000009099
Aliases:None
Description:GABA(A) receptor-associated protein like 1 [Source:HGNC Symbol;Acc:4068]


Retrocopy-Parental alignment summary:






>retro_ttru_1563
ATGAAGTTCGTGTATAAAGAGGAGCATCCTTTCGAGAAGCGGCGCTCTGAGGGCGAGAAGATCCGAAAGAAATACCCGGA
CCGGTTCCCGGTGATCGTTGAAAAGGCTCCCAGATCTCGGATAGGAGACCTGGACAAAAGGAAATGCCTGCTGCCTTCTG
ATCTTACAGTTGGTCAGTTCTACTTCTTGATCCAGAAGCGAATTCATCTCCGAGCTGAGGATGACTTGTTTTTCTTTGTC
AACAATGTCATTCCACCCACGAGTGCCGGGATGGGTCAGCTATACCAGGAACACCATGAAGAAGACTTCTTTCTATATGT
TGCCTCCAGTGATGAAAGTGTCTACGGT

ORF - retro_ttru_1563 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.03 %
Parental protein coverage: 99.15 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHL
MKF.YKE.HPFE.R..EGEKIRKKYPDR.PVIVEKAP..R..DLDKRK.L.PSDLTVGQFYFLI.KRIHL
RetrocopyMKFVYKEEHPFEKRRSEGEKIRKKYPDRFPVIVEKAPRSRIGDLDKRKCLLPSDLTVGQFYFLIQKRIHL
ParentalRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
R.ED.LFFFVNN.IPPTSA.MGQLY...HEED.FLYVA.SDESVYG
RetrocopyRAEDDLFFFVNNVIPPTSAGMGQLYQEHHEEDFFLYVASSDESVYG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1563 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1563 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Macaca mulatta ENSMMUG000000021971 retrocopy
Oryctolagus cuniculus ENSOCUG000000168343 retrocopies
Sarcophilus harrisii ENSSHAG000000074341 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000022461 retrocopy
Tursiops truncatus ENSTTRG000000088212 retrocopies
Tursiops truncatus ENSTTRG00000009099 3 retrocopies
retro_ttru_1451, retro_ttru_1563 , retro_ttru_1629,



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