RetrogeneDB ID:

retro_ttru_1606

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_57912:0..1183(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZCCHC7
Ensembl ID:ENSTTRG00000006054
Aliases:None
Description:zinc finger, CCHC domain containing 7 [Source:HGNC Symbol;Acc:26209]


Retrocopy-Parental alignment summary:






>retro_ttru_1606
TCAGATGGGTCAGAGGTCATCACACTGTCTGATGAAGATAGTATTTATAAATGTAAAAGAAAGAATTTTAGAGTCCATGC
AGAAGAAAGGACCCAAGGTCCTCTGCTTTTCTTCATTCTAATGAGTTGGCAGATAAGAAATGCAAGAGGGATATTGAGAA
GACTAAACCTGGAGAGAGATCAGGTACAATCCAAGAGGTCATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCA
CCATTTCAGAAAGCGATAATGTGGAAAGCTGGATGCTGCTGGGATGTGAAGTTGATGATAAAGATGACGATATCCTTCTC
AATCTTGTGGGGTGTGAAAATTCTCTTAATGAAGGAGAAGATGGTGTAAACTGGTTCATCAGTGACAAAGACATTGAGGC
ACAGATAGGTAAAAAAAGAACATCTGGAAGATGGACCCACCGATACTATTCAGTCAACAAAAACGTTACCTGTAGAAATT
GTGACAAATGTGGCCATTTGTCAAAAAACTGCCCCTTTCCACAAAAAGTCCGCTCCTGTTGCCTCTGCTCCGAGAGAGGA
CACCTCCAGTATGCCTGTCCGGCCCGCTTTTGCTTAGACTGTTCTTTGCCTATGTCTTTTACTCACAGATGTCTTGAAAG
ACCTTCCTGGAGAAAACGGTGTGACAGATGTGACATGATAGGCCACTATGCTGATGCTTGCCCAGAAATCTGGAGGCAGT
ATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCAAAGACCCCTTCTGGAAAATCAGCCTTAGTGTATTGCTACAAC
TGCGGGCAAGAAGGCCATTACGGACATGAATGTACAGAAAGACGAATGTTTAGCCAGACCTTTCCAACATCTCCATTCAT
CTACTACTATGATGACAAATATGAAATCCGGGAGAGAGATCAGAGAATAAAACGAAAAGTGAAAGAACTTCAGAAGAATG
GGGACTTTCCAAGGCAGTTCAAGAGGCCTCATATGGAAGCAGCAGATAAGAGGCCCCACCGTGATATGAGGAAGAGCCAT
GCCTCATGGAGAAGTAACACGTGGTCTCAAGAAAAGAAGAAACCCAAAAGAAGTCATGAACAGGACCAGCAGAGAGCGTG
AGAGCACAGAGCTGACAGTGTCATGAAGTGGATGAGGACTACCCAGGGCCCAAAGTCCACTTT

ORF - retro_ttru_1606 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.8 %
Parental protein coverage: 73.01 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalSDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP-PAFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI
SDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP..AFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI
RetrocopySDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP<SAFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI
ParentalIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK
IEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK
RetrocopyIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK
ParentalRTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP---KVRSCCLCSERGHLQYACPARFCLDCSLPMSSTH
RTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP...KVRSCCLCSERGHLQYACPARFCLDCSLPMS.TH
RetrocopyRTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCPFPQKVRSCCLCSERGHLQYACPARFCLDCSLPMSFTH
ParentalRCLERPSWRKRCDRCDMIGHYADXXXXXXXXXXXXTKPGPPKKPKTPSGQSALVYCYNCGQEGHYGHECT
RCLERPSWRKRCDRCDMIGHYAD............TKPGPPKKPKTPSG.SALVYCYNCGQEGHYGHECT
RetrocopyRCLERPSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGKSALVYCYNCGQEGHYGHECT
ParentalERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS
ERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS
RetrocopyERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS
ParentalWRSNTWPQEKK-ETQ-KEAMNRTSRERE-KHRKAD-KCHEVDEDYPRGPKVHF
WRSNTW.QEKK.ETQ.KE.MNRTSRERE..HR.AD..CHEVDEDYP.GPKVHF
RetrocopyWRSNTWSQEKK<ETQ<KEVMNRTSRERE<EHR-AD<QCHEVDEDYP-GPKVHF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1606 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1606 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001479051 retrocopy
Macaca mulatta ENSMMUG000000074211 retrocopy
Pongo abelii ENSPPYG000000297631 retrocopy
Pan troglodytes ENSPTRG000000209392 retrocopies
Tursiops truncatus ENSTTRG00000006054 2 retrocopies
retro_ttru_1606 , retro_ttru_505,



Copyright © RetrogeneDB 2014-2017