RetrogeneDB ID: | retro_ttru_1619 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_72028:0..465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000006822 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK1 | ||
Ensembl ID: | ENSTTRG00000001085 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722] |
Percent Identity: | 93.87 % |
Parental protein coverage: | 53.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL |
MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL | |
Retrocopy | MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL |
Parental | MQDSRLYLIFEFLSMDLKKYLDSIPPGQFMDPSLVKVKSQSYLYQILQGIVFCHSRRVLHRD-LKPQ-NL |
MQDSRLYLIFEFLSMDLKKYLDSIPPGQFMDPSLVK....SYLYQILQGIVFCHSRRVLHRD.LKPQ.NL | |
Retrocopy | MQDSRLYLIFEFLSMDLKKYLDSIPPGQFMDPSLVK----SYLYQILQGIVFCHSRRVLHRD<LKPQ<NL |
Parental | LIDDKGTI-KLADFGLARAFGIP |
LIDDK.TI..L.DFGLARAFGIP | |
Retrocopy | LIDDKRTI<QLTDFGLARAFGIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |
retro_ttru_1619 , retro_ttru_1634,
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