RetrogeneDB ID:

retro_ttru_1627

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_76096:115..444(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DUSP11
Ensembl ID:ENSTTRG00000015444
Aliases:None
Description:dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:HGNC Symbol;Acc:3066]


Retrocopy-Parental alignment summary:






>retro_ttru_1627
ATGAGCCAGTGGCATCATGCCCGTGGGCGCTGGGGTTAGGGTCGCGGCTTTTCCGGACTTTCATCGGCCAAGAGGAAGGG
CGGAAAGCACATCCCGGAAAGGTGGAAAGACTATCTCCCAGTTGGACAGCGGATGCCTGGGACTCCTTTCATTGCTTTCA
AAGTTCCTTTAAAAAAGAGTTTTGAAAAGAATCTTGCTCCAGAAGAATGCTTTTCCCCCCTTGGATCTTTTTTAACAAAC
TCCAAGAACAGAATGAAGAACTTGGGCTGATTATTGATTTATCATATACTCGCCGCTATTATAAGCCAGAGATACACCAG
AAATACATC

ORF - retro_ttru_1627 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.48 %
Parental protein coverage: 60.34 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSQWHHARGHWGQRRGFSGRSSARRKGGKHMPERWEDYLPVEQPMSGTRFLAFKVPLKKSFEKNLASEEL
MSQWHHARG.WG..RGFSG.SSA.RKGGKH.PERW.DYLPV.Q.M.GT.F.AFKVPLKKSFEKNLA.EE.
RetrocopyMSQWHHARGRWG*GRGFSGLSSAKRKGGKHIPERWKDYLPVGQRMPGTPFIAFKVPLKKSFEKNLAPEEC
ParentalFS-LLDL-FNKL-EQNEELGLIIDLTYNRRFYKPEDLQEII
FS..LDL.FNKL.EQNEELGLIIDL.Y.RR.YKPE..Q..I
RetrocopyFS>PLDL>FNKLQEQNEELGLIIDLSYTRRYYKPEIHQKYI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1627 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1627 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000120412 retrocopies
Echinops telfairi ENSETEG000000053041 retrocopy
Macropus eugenii ENSMEUG000000093701 retrocopy
Tupaia belangeri ENSTBEG000000146001 retrocopy
Tursiops truncatus ENSTTRG00000015444 5 retrocopies



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