RetrogeneDB ID:

retro_ttru_1628

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_76460:0..277(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF3
Ensembl ID:ENSTTRG00000013447
Aliases:None
Description:serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]


Retrocopy-Parental alignment summary:






>retro_ttru_1628
ACATTACATGGCTGCCTATTAAGAGTGGACCTGTCGAATGGGAAAAGAGAAGTCGAAATCGTGGCCGCTCTCTTGGGGTC
GTCGCCCTCGATATGATTATCAGAGGATTCCTCCATCTCGCCACAGATCTCCAAGACGGAGAAGCTTCTCCCGCAGCCGG
AGCACGTCCCCTTCTAGAGATAGGAGAAGAGAGAGATCACTGTCCTGGGAGAGAAATCACAAGCTGTCCCGATCTTTCTC
TAGGTCTCCTAGCCGATCCAGGTCAAATGAAAGGAAA

ORF - retro_ttru_1628 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.96 %
Parental protein coverage: 57.93 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTLCGCRVRVELSN-GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERS
TL.GC..RV.LSN.G...S.....P.SWGRRPR.DY.R..PP.R.RSPRRRSFSRSRS.S.SRDRRRERS
RetrocopyTLHGCLLRVDLSN>GKEKSKSW--PLSWGRRPRYDYQR-IPPSRHRSPRRRSFSRSRSTSPSRDRRRERS
ParentalLSRERNHKPSRSFSRSRSRSRSNERK
LS.ERNHK.SRSFSRS.SRSRSNERK
RetrocopyLSWERNHKLSRSFSRSPSRSRSNERK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1628 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1628 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 80 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000400065 retrocopies
Callithrix jacchus ENSCJAG000000160625 retrocopies
Homo sapiens ENSG000001120814 retrocopies
Loxodonta africana ENSLAFG000000181932 retrocopies
Microcebus murinus ENSMICG000000046745 retrocopies
Myotis lucifugus ENSMLUG000000106716 retrocopies
Mustela putorius furoENSMPUG000000142151 retrocopy
Mus musculus ENSMUSG000000711729 retrocopies
Otolemur garnettii ENSOGAG000000005026 retrocopies
Ochotona princeps ENSOPRG000000060063 retrocopies
Rattus norvegicus ENSRNOG0000000052011 retrocopies
Sus scrofa ENSSSCG000000015641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000142805 retrocopies
Tarsius syrichta ENSTSYG000000134983 retrocopies
Tursiops truncatus ENSTTRG00000013447 11 retrocopies
Tursiops truncatus ENSTTRG000000154102 retrocopies
Vicugna pacos ENSVPAG000000054811 retrocopy



Copyright © RetrogeneDB 2014-2017