RetrogeneDB ID:

retro_ttru_1633

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_77455:0..602(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KHDRBS3
Ensembl ID:ENSTTRG00000001270
Aliases:None
Description:KH domain containing, RNA binding, signal transduction associated 3 [Source:HGNC Symbol;Acc:18117]


Retrocopy-Parental alignment summary:






>retro_ttru_1633
CATGCTCTGGAGGAATCAAAAAGTTCCTCATTCCAGACTATAATGATGAAATCAGGCAAGCACAGCTCCAGGAATTAACA
TATTTGAATGGTGGTTCAGAAAATGCAGATGTACCAGTTGTTCGAGGGAAACCTACCTTGCGTACAAGAGGTGTACCAAC
CCCAGCAATAACCAGGGGAAGGGGAGGAGTCGCGGCCCGGCCAGTGGGAGTCGGGGTACCACGAGGGACGCCAACTTCCA
GAGGAATCCTTTCCACCCGAGGGCCAGTGAGTCGAGGAAGAGGACTTCTCACTCCCAGAGCAAGAGATGTCCCCCCAACT
GGGTACAGACCTCCACCGCCGCCCCCAACACAAGAGACCTATGGAGATTATGACTATGATGATGGATATGGCGCTGCTTA
TGATGAACAGAGTTATGATTCCTATGATAACAGTTATAGCGCCCCAGCCCAAAGTGGTGCTGATTACTATGATTATGGAC
ACGGACTCAGTGAAGAGACTTATGATTCCTACGGGCAAGAGGAGTGGACAAACTCAAGACACAAGGCACCCTCGGCAAGG
ACAGCAAAGGGCGTCTACAGAGACCAGCCATACAGCAGATAC

ORF - retro_ttru_1633 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.01 %
Parental protein coverage: 58.09 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalHALEE-IKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGVPTPAITRGRGGVAARPV
HALEE.IKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGVPTPAITRGRGGVAARPV
RetrocopyHALEE<IKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGVPTPAITRGRGGVAARPV
ParentalGVGVPRGTPTSRGILSTRGPVSRGRGLLTPRARGVPPTGYRPPPPPPTQETYGDYDYDDGYGAAYDEQSY
GVGVPRGTPTSRGILSTRGPVSRGRGLLTPRAR.VPPTGYRPPPPPPTQETYGDYDYDDGYGAAYDEQSY
RetrocopyGVGVPRGTPTSRGILSTRGPVSRGRGLLTPRARDVPPTGYRPPPPPPTQETYGDYDYDDGYGAAYDEQSY
ParentalDSYDNSYSAPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYSRY
DSYDNSYSAPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYSRY
RetrocopyDSYDNSYSAPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYSRY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1633 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1633 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000108782 retrocopies
Dipodomys ordii ENSDORG000000145951 retrocopy
Equus caballus ENSECAG000000101941 retrocopy
Otolemur garnettii ENSOGAG000000051503 retrocopies
Sarcophilus harrisii ENSSHAG000000006321 retrocopy
Tursiops truncatus ENSTTRG00000001270 2 retrocopies
retro_ttru_1633 , retro_ttru_1929,



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