RetrogeneDB ID: | retro_ttru_1634 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_77607:331..816(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK1 | ||
Ensembl ID: | ENSTTRG00000001085 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722] |
Percent Identity: | 76.69 % |
Parental protein coverage: | 53.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFH |
ID.KGTIKL.DFG.ARA.GIPIRVY.HE.VTL..RSPEVLLGSA.YSTPVDIW.I.TIFAEL.TKKPLF. | |
Retrocopy | IDNKGTIKLVDFGFARASGIPIRVYIHELVTLR*RSPEVLLGSAHYSTPVDIWHIDTIFAELTTKKPLFY |
Parental | GDSEIDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGS-LASHVKNLDENGLDLLSKMLVYDPAK |
G.SE.DQLF.IFR.LG.P.NE.WPEV.SLQDYKNTFPK.KPGS.LASHVK.L.ENGLDLLSK.LVY.P.K | |
Retrocopy | GNSEVDQLFKIFRTLGPPSNEAWPEVASLQDYKNTFPK*KPGS<LASHVKSLVENGLDLLSKTLVYNPVK |
Parental | RISGKMALNHPYFNDLDNQIKKM |
....K..L..PYFN.LDN.IKKM | |
Retrocopy | ETADKIKLSYPYFNGLDNHIKKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |
retro_ttru_1619, retro_ttru_1634 ,
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