RetrogeneDB ID:

retro_ttru_1638

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_82176:7841..9253(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000012474
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1638
ATGGCGGGGGGCGAGGCTGGTGTGACTCTGGGGCAGCAACATCTTTCTCACCAAGATCTCACCACACTGGATGTTACCAG
GTTGACTCAACTCTCGCATGAAGTTATCAGCAGACAAGCCACAATTAATATAGGTACACTTGGTCACATTGCCCATGGAA
AATCTACCTTTGTGAAAGCTATTTCTGGAATTCACACTGTCAGGTTCAAAAACGAACTAGAAAGAAATATTATGATCAAG
CTTGGATAGGCTAATGTCAAGATTTACAAACTTAATGAGGCAAACTGTCTTAGCCAGAATGTTACAGATCTTATGGAAGT
AGTATACCTGATGAGTTTCCTATAGACATTCCATGGACCAAAGGGAACTTCAGACTAGTCAGACATGTTTTCTTTGTTGA
CTGTCCTGGCCATGATATTTTGATGGCTACTGTGCTGAATGGTGCAGCAGTGATGGTTGCAGCTCTTCGGTTAATAGCTG
GTAATGAATCCTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCCATAGAAATTATGAAGCTGAAACATATTTTGATT
CTGCAGAATGAAATTGATTTGGTAAAAGAAAGTCAGGCTAAAGAACAGTATGAACAGATCCTTGCATTTGTACAAGGTAC
AGTAGCAAGAGGAGCTCCTATTATTCCAATTTCTGCTCATCTGAAATATAATACTGAAGTTGTCTGTGAGTATATCATTA
AGAAAATTCCAGTACCTCTAAGAGACTTTACTTCAGAACCCCAACTTACTGTTATTAGGTCCTTTGATGTCACCAAACCT
GGCTGTGAGTTTGATGACCTTAAAGGTGGTGTGGCTAGTAGTAGTATTTTAAAAGGAGTATTAAAGGTGGGCCAGGAGAT
AGAAGTCAGACCTGGTATTGTTTCCAAAGATAGCAAAGGAAAACTCGTGTAAACCAATCTTTTCCAAAATTGTATTACTT
TTGAGGAACAAAATGATCTTCAGTATGCTGCTCCAGGGGGTCTTATTGGAGTTGGAAGAAAAATTCACCCCACTTTGTGC
TGGGCTGACAGAATGGTGGGGCACGTACTTGGTGTAGTTGGAGCTTTACCAGAGATCTTCACAGAATTGGAAATTTCCTA
TTTCCTACTTAGACGACTTCTTGGTGTACACATGGAAGGAGACAAAAAAGCAGCAAAGGGTCAAAAGCTATCTAAGAATG
AAGTGCTTATGGTGAACACAGGATCCCTTTCAACAGGAGGAAGAGTTGGGGCAGTCAAGGCTGATTTGGGTAAAATCGTT
CTCACCAATCCTGTGTGCACAGAAGTGGGAGAAAAAATAGCCCTTAGCCAGAGAGTTGAGAAACACTGGTGTTTAATTGG
TTGGGGTCAGATAAGAAGAGGAGTAACAATCAAGCCACCAGCAGATGATGAC

ORF - retro_ttru_1638 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.62 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAGGEAGVTLGQPHLSRQDLNTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFK
MAGGEAGVTLGQ.HLS.QDL.TLDVT.LT.LSHEVISRQATINIGT.GH.AHGKST.VKAISG.HTVRFK
RetrocopyMAGGEAGVTLGQQHLSHQDLTTLDVTRLTQLSHEVISRQATINIGTLGHIAHGKSTFVKAISGIHTVRFK
ParentalNELERNITIKLGYANAKIYKLDDPSCPR-PECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHD
NELERNI.IKLG.AN.KIYKL....C...PECYRS.GSS.PDEFP.DIP.TKGNF.LVRHV.FVDCPGHD
RetrocopyNELERNIMIKLG*ANVKIYKLNEANCLS<PECYRSYGSSIPDEFPIDIPWTKGNFRLVRHVFFVDCPGHD
ParentalILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILA
ILMAT.LNGAAVM.AAL.LIAGNESCPQPQTSEHLAAIEIMKLKHILILQN.IDLVKESQAKEQYEQILA
RetrocopyILMATVLNGAAVMVAALRLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNEIDLVKESQAKEQYEQILA
ParentalFVQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVA
FVQGTVA.GAPIIPISA.LKYN.EVVCEYI.KKIPVP.RDFTSEP.L.VIRSFDV.KPGCE.DDLKGGVA
RetrocopyFVQGTVARGAPIIPISAHLKYNTEVVCEYIIKKIPVPLRDFTSEPQLTVIRSFDVTKPGCEFDDLKGGVA
ParentalGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCR
..SILKGVLKVGQEIEVRPGIVSKDS.GKL.....F......F.E.NDLQYAAPGGLIGVG.KI.PTLC.
RetrocopySSSILKGVLKVGQEIEVRPGIVSKDSKGKLV*TNLFQNCIT-FEEQNDLQYAAPGGLIGVGRKIHPTLCW
ParentalADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSA
ADRMVG.VLG.VGALPEIFTELEISYFLLRRLLGV..EGDKKAAK.QKLSKNEVLMVN.GSLSTGGRV.A
RetrocopyADRMVGHVLGVVGALPEIFTELEISYFLLRRLLGVHMEGDKKAAKGQKLSKNEVLMVNTGSLSTGGRVGA
ParentalVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
VKADLGKIVLTNPVCTEVGEKIALS.RVEKHW.LIGWGQIRRGVTIKP..DDD
RetrocopyVKADLGKIVLTNPVCTEVGEKIALSQRVEKHWCLIGWGQIRRGVTIKPPADDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1638 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1638 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000143371 retrocopy
Dasypus novemcinctus ENSDNOG000000185841 retrocopy
Equus caballus ENSECAG000000173431 retrocopy
Echinops telfairi ENSETEG000000003414 retrocopies
Loxodonta africana ENSLAFG000000110521 retrocopy
Macaca mulatta ENSMMUG000000069794 retrocopies
Monodelphis domestica ENSMODG000000075412 retrocopies
Pongo abelii ENSPPYG000000201941 retrocopy
Pteropus vampyrus ENSPVAG000000025331 retrocopy
Sus scrofa ENSSSCG000000121781 retrocopy
Tursiops truncatus ENSTTRG00000012474 4 retrocopies



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