RetrogeneDB ID:

retro_ttru_1652

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_83393:9208..9519(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SUMO1
Ensembl ID:ENSTTRG00000000642
Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]


Retrocopy-Parental alignment summary:






>retro_ttru_1652
CCGCTGTGTTGTGCTGTGGGGAAGGGAGACGGATTTGTAGACCCCAGAGCAAGGTTCTGCCTACCCGAGGCCGCTGCTAT
GCGGAGACCCCAGGGGAAACCACAGTCACCATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAA
GGAAGGAGAATATATTAAACTCAAAGTCATCAGACAGGATAGCTGTGAGATTCACTTCAAAGTGAAAATGACAACACATC
TCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGAGTTCCCATGAATTCACTCAGGTTTCTCTTTGAA

ORF - retro_ttru_1652 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.48 %
Parental protein coverage: 72.54 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPRCCAVGKGDGFVNPGARFCLPE-AAAVR-RPGETTVTMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSS
P.CCAVGKGDGFV.P.ARFCLPE.AA..R..PGETTVTMSDQEAKPSTEDLGDKKEGEYIKLKVI.QDS.
RetrocopyPLCCAVGKGDGFVDPRARFCLPEAAAMRR<TPGETTVTMSDQEAKPSTEDLGDKKEGEYIKLKVIRQDSC
ParentalEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE
EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE
RetrocopyEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1652 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1652 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 77 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000098596 retrocopies
Canis familiaris ENSCAFG000000124318 retrocopies
Callithrix jacchus ENSCJAG000000049613 retrocopies
Cavia porcellus ENSCPOG000000121431 retrocopy
Equus caballus ENSECAG000000246934 retrocopies
Erinaceus europaeus ENSEEUG000000131616 retrocopies
Felis catus ENSFCAG000000310056 retrocopies
Homo sapiens ENSG000001160305 retrocopies
Gorilla gorilla ENSGGOG000000264395 retrocopies
Myotis lucifugus ENSMLUG000000075042 retrocopies
Mustela putorius furoENSMPUG000000003352 retrocopies
Mus musculus ENSMUSG000000260215 retrocopies
Otolemur garnettii ENSOGAG000000303451 retrocopy
Pongo abelii ENSPPYG000000130833 retrocopies
Pan troglodytes ENSPTRG000000128171 retrocopy
Rattus norvegicus ENSRNOG000000161332 retrocopies
Sorex araneus ENSSARG000000082058 retrocopies
Sarcophilus harrisii ENSSHAG000000119681 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000254054 retrocopies
Tursiops truncatus ENSTTRG00000000642 4 retrocopies



Copyright © RetrogeneDB 2014-2017