RetrogeneDB ID:

retro_ttru_1659

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_83597:6944..7384(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTTRG00000016570
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS7
Ensembl ID:ENSTTRG00000001616
Aliases:None
Description:ribosomal protein S7 [Source:HGNC Symbol;Acc:10440]


Retrocopy-Parental alignment summary:






>retro_ttru_1659
AGTGTGAAGATAGTGAAGCCCAATGGTGAAAAGTGGGATGAGTTTTAGTCCAGCATCTCTCAGGGTCTCCTTGAGCTGAA
AATGAATTCAGACCTTAAGTCCCAGATAAGAGAGCTGAATATAACAGCAGCCAGCGAAAGTAAGTTGATAGCGGTCAGAA
AGCTATTATGATCATTGTTCCTGTTCCTCAACTGAAATCTTTCGAGAAAAACCAAGTCTGGTAAGTACTTGAATTGGAGA
AAATGTTCAGTGAGAAATACATTATCTTTAAAGCCCAGAGGAGAATTCCGCCTAAGCCAACCAGAAACGGCTGTACAAAA
AAATAAGCAAAAGCATCCTAGAAACCATACTCTGACAACCATGCACATGTGATCCTAGAGGACTTAGTCTTTCCAAGTGA
AAGTGTAGGCAAGAGAACCCAGGTGAAACTGAATGCCAAC

ORF - retro_ttru_1659 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.33 %
Parental protein coverage: 76.44 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalSSAIVKP-GEKPDXXXXXXXXALLELEMNSDLKAQLRELNITAAKEIE-VGGGRKAIIIFVPVPQLKSFQ
S..IVKP.GEK.D.........LLEL.MNSDLK.Q.RELNITAA.E...V..G.KAI.I.VPVPQLKSF.
RetrocopySVKIVKPNGEKWDEF*SSISQGLLELKMNSDLKSQIRELNITAASESK<VDSGQKAIMIIVPVPQLKSFE
ParentalKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT-KNKQKRPRSRTLTAVH-DAILEDLVFPSEIVG
K.QV..V.ELEK.FS.K...F.AQRRI.PKPTR...T.KNKQK.PR..TLT..H...ILEDLVFPSE.VG
RetrocopyKNQVW*VLELEKMFSEKYIIFKAQRRIPPKPTRNGCT>KNKQKHPRNHTLTTMH<HVILEDLVFPSESVG
ParentalKRIRVKLDGS
KR..VKL...
RetrocopyKRTQVKLNAN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1659 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1659 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 105 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000164622 retrocopies
Dasypus novemcinctus ENSDNOG0000001328514 retrocopies
Equus caballus ENSECAG000000202532 retrocopies
Felis catus ENSFCAG000000232432 retrocopies
Gorilla gorilla ENSGGOG0000002309513 retrocopies
Loxodonta africana ENSLAFG0000001508711 retrocopies
Myotis lucifugus ENSMLUG000000061211 retrocopy
Macaca mulatta ENSMMUG000000118707 retrocopies
Mus musculus ENSMUSG000000614772 retrocopies
Nomascus leucogenys ENSNLEG0000001540710 retrocopies
Oryctolagus cuniculus ENSOCUG000000085072 retrocopies
Otolemur garnettii ENSOGAG000000281651 retrocopy
Pongo abelii ENSPPYG0000002587212 retrocopies
Pan troglodytes ENSPTRG000000116153 retrocopies
Pteropus vampyrus ENSPVAG000000020717 retrocopies
Rattus norvegicus ENSRNOG000000085512 retrocopies
Sus scrofa ENSSSCG000000273535 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000248303 retrocopies
Tursiops truncatus ENSTTRG00000001616 6 retrocopies



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