RetrogeneDB ID: | retro_ttru_1682 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_85296:42975..43354(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTTRG00000015372 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.42 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LQKWKRSHKR-RQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKTEKLKMRRAQLLMKQERKKP |
LQKW.RS.KR.RQERI.L.TKKCKQK.KGEQRE.R.KWLTKRLK.TYL..TEKL..R..Q.LMKQERKKP | |
Retrocopy | LQKWERSPKR>RQERIHLQTKKCKQKRKGEQRENRPKWLTKRLKTTYLR*TEKLRTRSPQPLMKQERKKP |
Parental | SLINHTPGPIS-GPCFPSCTIQRNIFINYFVNASFLVALETFLKRKE-SHLIPFFKCKC |
SLIN.T....S.GPC.PSCT.QRNIFINYFVNASF.V..ETF.KR...S.LIPFF.CKC | |
Retrocopy | SLINTTHPVLS>GPCLPSCTFQRNIFINYFVNASFSVVPETFFKRRD<SYLIPFFNCKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies |
retro_ttru_1034, retro_ttru_129, retro_ttru_1511, retro_ttru_1682 , retro_ttru_1714, retro_ttru_200, retro_ttru_337, retro_ttru_373, retro_ttru_558, retro_ttru_61, retro_ttru_680, retro_ttru_980,
|
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |