RetrogeneDB ID:

retro_ttru_172

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1483:67179..67515(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPP19
Ensembl ID:ENSTTRG00000004804
Aliases:None
Description:cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967]


Retrocopy-Parental alignment summary:






>retro_ttru_172
ATGTCCGCGGAAGTCCCCGAGGCAGCCTCCGCGGAGGAGCAGAAGGAAATGGAAGACAAAGTGACTACTCCAGAGAAAGC
TGAAGAAGCAAAATTAAAAGTAAGGTATCCTCATCTGGGACAAAAGCCTGGAGGTTCAGATTTTTTAAGGAAACGATTGC
AGAAAGGGCAAAAATATTTTGATTCTGGGGATTACAACATGGCTAAAGCAAAAATGAAGAACAAGCAACTTCCTACTGCA
GCTCCGGATAAGACAGACGTCACTGGTGACCACATTCCCACTCCACAGGACCTTCCTCAACGGAAACCATCTCTTGTTGC
TAGCAAGCTGGCTGGC

ORF - retro_ttru_172 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.32 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSAEVPEAASAEEQNEMEDKVTSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKA
MSAEVPEAASAEEQ.EMEDKVT.PEKAEEAKLK.RYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKA
RetrocopyMSAEVPEAASAEEQKEMEDKVTTPEKAEEAKLKVRYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKA
ParentalKMKNKQLPTAAPDKTDVTGDHIPTPQDLPQRKPSLVASKLAG
KMKNKQLPTAAPDKTDVTGDHIPTPQDLPQRKPSLVASKLAG
RetrocopyKMKNKQLPTAAPDKTDVTGDHIPTPQDLPQRKPSLVASKLAG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_172 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_172 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 48 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000110225 retrocopies
Canis familiaris ENSCAFG000000325152 retrocopies
Cavia porcellus ENSCPOG000000112281 retrocopy
Dasypus novemcinctus ENSDNOG000000044749 retrocopies
Dipodomys ordii ENSDORG000000113212 retrocopies
Echinops telfairi ENSETEG000000155501 retrocopy
Homo sapiens ENSG000001289892 retrocopies
Gorilla gorilla ENSGGOG000000252501 retrocopy
Nomascus leucogenys ENSNLEG000000065512 retrocopies
Oryctolagus cuniculus ENSOCUG0000001548910 retrocopies
Otolemur garnettii ENSOGAG000000138651 retrocopy
Pongo abelii ENSPPYG000000064872 retrocopies
Pan troglodytes ENSPTRG000000421831 retrocopy
Sus scrofa ENSSSCG000000046181 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000036777 retrocopies
Tursiops truncatus ENSTTRG00000004804 1 retrocopy
retro_ttru_172 ,



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