RetrogeneDB ID:

retro_ttru_1729

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_88842:22363..22792(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NAA50
Ensembl ID:ENSTTRG00000009849
Aliases:None
Description:N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533]


Retrocopy-Parental alignment summary:






>retro_ttru_1729
CGGATCGAGCTGGGAGATGTGACACCACACAATATTAAACAGTTGTAGAGATTAAACCAGGTCATCTTTTCAGTCAGCTA
CAATGACAAGTTCTATAAGGATGTGCTGGAGGTTGGCGAGCTAGCAAAATTTGCCTATTTCAATGATATTGCTGCAGGCG
CAGTATGTTGTAGGGTGAATCATTCACAGAATCAGAAGAGACTTTACATCATGACACTAGGGTGTCTGGTACCATACCGA
AGGCTAGGAATAAGAACTAAAATGTTAAATCATGTCTTAAACATCTGTGAAAAAGTTGGCACTTTTGACAACATCTATCT
GCATGTCCAGATCAGCAATGAGTCTGCAATTGACCTCTACAGAAAGTTTGGCTTTGAGATTATTGAGACAAAGAAGAATT
ACTGTAAGTGGATAGAGCCCGCAGATGCA

ORF - retro_ttru_1729 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.31 %
Parental protein coverage: 84.62 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYI
RIELGDVTPHNIKQL.RLNQVIF.VSYNDKFYKDVLEVGELAK.AYFNDIA.GAVCCRV.HSQNQKRLYI
RetrocopyRIELGDVTPHNIKQL*RLNQVIFSVSYNDKFYKDVLEVGELAKFAYFNDIAAGAVCCRVNHSQNQKRLYI
ParentalMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEP
MTLGCL.PYRRLGI.TKMLNHVLNICEK.GTFDNIYLHVQISNESAID.YRKFGFEIIETKKNY.K.IEP
RetrocopyMTLGCLVPYRRLGIRTKMLNHVLNICEKVGTFDNIYLHVQISNESAIDLYRKFGFEIIETKKNYCKWIEP
ParentalADA
ADA
RetrocopyADA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1729 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1729 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000010271 retrocopy
Homo sapiens ENSG000001215791 retrocopy
Nomascus leucogenys ENSNLEG000000046241 retrocopy
Otolemur garnettii ENSOGAG000000111971 retrocopy
Procavia capensis ENSPCAG000000097802 retrocopies
Sorex araneus ENSSARG000000041341 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000094381 retrocopy
Tursiops truncatus ENSTTRG00000009849 3 retrocopies
retro_ttru_1729 , retro_ttru_1814, retro_ttru_948,



Copyright © RetrogeneDB 2014-2017