RetrogeneDB ID:

retro_ttru_1771

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_91159:218006..218419(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM136A
Ensembl ID:ENSTTRG00000001198
Aliases:None
Description:family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:25911]


Retrocopy-Parental alignment summary:






>retro_ttru_1771
ATGGCGGAGCTGCAGCAGCTCCGAGTGCAGGAGGCAGTGAACTCTATGGTGAAAAGGATGGAGAGAGAGAACATTGGAAG
ATGCAGGGCCTCATGTTCCGGTGCATCACCGGCTGTTGTGAGGACAGCCAGGCCACCATGCAGCAAGTGCGCCAGTGCAT
TGAGCGCTGCCATGCACCTCTGGCTCAACGCCAGGCCCTGGTGACCAGCGAGTTGCAGAAGTTCCAGGACTGCCTGGAAT
GGTGCACTATGCATTGCAACGACAAAGCCAAAGATTCAGTAGATGCGGGGCGTAAAGAGCTTCAGGTGAAGCGGCAGCTG
GAGAGTTGCGTGACCAAGTGTGTGGATGAACACATGAACCTCATCCCAGTCATGACCAAGAAGATGAAGGAGTCTCTCTC
AACCATTGGGAAA

ORF - retro_ttru_1771 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.61 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAELQQLRVQEAVDSMVKCLERENIR-KMQGLMFRCSAGCCEDSQASMQQVHQCIERCHAPLAQAQALVT
MAELQQLRVQEAV.SMVK..ERENI..KMQGLMFRC..GCCEDSQA.MQQV.QCIERCHAPLAQ.QALVT
RetrocopyMAELQQLRVQEAVNSMVKRMERENIG<KMQGLMFRCITGCCEDSQATMQQVRQCIERCHAPLAQRQALVT
ParentalSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKRQLESCVTTCVDDHMNLIPTMTKKMKESLSSIGK
SEL.KFQD.L..CTMHCNDKAKDS.DAG.KELQVKRQLESCVT.CVD.HMNLIP.MTKKMKESLS.IGK
RetrocopySELQKFQDCLEWCTMHCNDKAKDSVDAGRKELQVKRQLESCVTKCVDEHMNLIPVMTKKMKESLSTIGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1771 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1771 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 82 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000159921 retrocopy
Bos taurus ENSBTAG000000086742 retrocopies
Canis familiaris ENSCAFG000000033532 retrocopies
Cavia porcellus ENSCPOG000000091171 retrocopy
Dasypus novemcinctus ENSDNOG000000194477 retrocopies
Dipodomys ordii ENSDORG000000065294 retrocopies
Felis catus ENSFCAG000000081191 retrocopy
Homo sapiens ENSG000000351415 retrocopies
Gorilla gorilla ENSGGOG000000232476 retrocopies
Macropus eugenii ENSMEUG000000157918 retrocopies
Macaca mulatta ENSMMUG000000079625 retrocopies
Monodelphis domestica ENSMODG000000115331 retrocopy
Mus musculus ENSMUSG000000574972 retrocopies
Otolemur garnettii ENSOGAG000000282654 retrocopies
Pongo abelii ENSPPYG000000123236 retrocopies
Pan troglodytes ENSPTRG000000120306 retrocopies
Rattus norvegicus ENSRNOG000000162731 retrocopy
Sus scrofa ENSSSCG000000264466 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000083431 retrocopy
Tupaia belangeri ENSTBEG000000174188 retrocopies
Tursiops truncatus ENSTTRG00000001198 5 retrocopies



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