RetrogeneDB ID:

retro_ttru_1788

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_91619:2646..3446(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HNRNPA2B1
Ensembl ID:ENSTTRG00000000709
Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]


Retrocopy-Parental alignment summary:






>retro_ttru_1788
AAAGCAGCGGCGGCGGCTCTAGCGGCAGTAGCAGTAGCGCCGGGTCCAGAGAGTGGAGGTGCTCCTAGAGCAGCGGCAGT
TCTGACTACAGCGCAGGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTCTCTCATCTCGCTCGGCTGCGGGAAATCG
GGCTGAAGCGACGGAGTCTGCGATGGAGAGAGAAAAGGAACAAATCCGTAAACTCTTTATTGGTGGCCTGAGCTTTGAAA
CTACAGAAGAAAGTTTGAAGAACTACTGCGAACAATGGGGGAAAACTTACAGACTGTGTGGTAATGAGGGATCCTGCAAG
CAAAAGATCATGAGGATTTCGTTTTGTAACTTTTTCATCCATGGCTGAGATCGATGCTGCCATGGCTGCCAGACCTCGTT
CAACTATGGGAGAGCGGTTGAACCAAAACATGCTGTTTGCAAGAGAGGAATCTGGAAAGCCAGGGGCTCATGTCACTCTG
AAGAAGCTGTTTGTAGGTGGAATTAAAGATGCTGAGGAACATTATCTTAGAGATTACTTTGAGGCATACGGACAAATTGT
TACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGGTTTGTTACTTTTGATGAGCATGATCCTG
TGGATAAGAGTGTGTTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAA
ATGCAGGAAGTCCAAAGTTCTAGAAGTGGAAGAGGAGGCCACTTTGGTTTGGAGATTCTCGTGGTGCTGGTGGCAATTTT

ORF - retro_ttru_1788 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.39 %
Parental protein coverage: 65.86 %
Number of stop codons detected: 2
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalRKAAAAALAAVAA-APGPEWRCSRCCFSTSGSSHYSARTSPVRVRPRRSLSSRSAAGNRAEATESAMERE
..AAAA..A...A.A...EWR....C...SGSS.YSA.TSPVRVRPRRSLSSRSAAGNRAEATESAMERE
RetrocopyKAAAAALAAVAVA<AGSREWR----CS*SSGSSDYSAGTSPVRVRPRRSLSSRSAAGNRAEATESAMERE
ParentalKEQFRKLFIGGLSFETTEESLRNYYEQWGK-LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHS
KEQ.RKLFIGGLSFETTEESL.NY.EQWGK.LTDCVVMRDPASKRS.GF.FVTFSSMAE.DAAMAARP.S
RetrocopyKEQIRKLFIGGLSFETTEESLKNYCEQWGK>LTDCVVMRDPASKRS*GFRFVTFSSMAEIDAAMAARPRS
ParentalIDG-RVVEPKRAV-AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKR
..G.R.VEPK.AV.AREESGKPGAHVT.KKLFVGGIK.D.EEH.LRDYFE.YG.I.TIEIITDRQSGKKR
RetrocopyTMG<RAVEPKHAV>AREESGKPGAHVTLKKLFVGGIK-DAEEHYLRDYFEAYGQIVTIEIITDRQSGKKR
ParentalGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNF
GFGFVTFD.HDPVDK.VLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGG.FG.FGDSRG.GGNF
RetrocopyGFGFVTFDEHDPVDKSVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGHFG<FGDSRGAGGNF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1788 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1788 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000057264 retrocopies
Choloepus hoffmanni ENSCHOG0000001383215 retrocopies
Ciona intestinalis ENSCING000000040621 retrocopy
Ciona savignyi ENSCSAVG000000004721 retrocopy
Dasypus novemcinctus ENSDNOG000000129281 retrocopy
Dipodomys ordii ENSDORG000000054821 retrocopy
Echinops telfairi ENSETEG000000185771 retrocopy
Felis catus ENSFCAG000000277651 retrocopy
Macropus eugenii ENSMEUG000000010842 retrocopies
Myotis lucifugus ENSMLUG000000075781 retrocopy
Mus musculus ENSMUSG000000049801 retrocopy
Oryctolagus cuniculus ENSOCUG000000268592 retrocopies
Ochotona princeps ENSOPRG000000116982 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000062023 retrocopies
Tursiops truncatus ENSTTRG00000000709 3 retrocopies
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788 ,
Tursiops truncatus ENSTTRG000000017932 retrocopies
Tursiops truncatus ENSTTRG0000000450527 retrocopies
Tursiops truncatus ENSTTRG000000075921 retrocopy
Tursiops truncatus ENSTTRG000000142253 retrocopies
Vicugna pacos ENSVPAG000000104171 retrocopy



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