RetrogeneDB ID:

retro_ttru_1828

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_92999:45904..46318(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GSTM3
Ensembl ID:ENSTTRG00000009682
Aliases:None
Description:glutathione S-transferase mu 3 (brain) [Source:HGNC Symbol;Acc:4635]


Retrocopy-Parental alignment summary:






>retro_ttru_1828
GGTTACTGGAACATTCACAGGCTGGCTCATACCATCTGCCTGCTTCTGGAATACAAAGACTTAAACTATGAGGGAAAGAA
GTACATGGCGGGGGATGCTCCTGACCATGACAGAAGCCAGTGACTGAATGAGAAATTGAAGCCAGGCCTGGACTTTCCCA
ATCTGCCCTATTTAATTGATGATGTTTTTGAGATCACCCAGAGCAATGTCATCTTTTGCTACATTGCTTACAAGTACAAC
CTATGAGGGGAGACAGAAGAGAAGATTCATGTGGACATTTTTGAGAACTAGGTTATAGACACCTCCAATTAGCTGGTCAG
TGTCTGCTACAGCCCTGACTTTGAGAAACTGAAGCCTAAGTACTTGGAGGATCTCTGTGAAAAGATGAAGCTCTTCTCTA
CTTTCTGGGGAAGA

ORF - retro_ttru_1828 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.68 %
Parental protein coverage: 62.05 %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGYWDIRGLAHAIRMLLEFTETAYEEKRYTCGEAPDYDKSQWLDMKFKLDLDFPNLPYLMDGKNKITQSNA
GYW.I..LAH.I..LLE.....YE.K.Y..G.APD.D.SQ.L..K.K..LDFPNLPYL.D....ITQSN.
RetrocopyGYWNIHRLAHTICLLLEYKDLNYEGKKYMAGDAPDHDRSQ*LNEKLKPGLDFPNLPYLIDDVFEITQSNV
ParentalILRYIARKHNMCGETEEEKIRVDMMENQIMDFRMQLIQLCYNADHEKLKPQYLEQLPGQLKQFSLFLGK
I..YIA.K.N..GET.EEKI.VD..EN...D....L...CY..D.EKLKP.YLE.L....K.FS.F.G.
RetrocopyIFCYIAYKYNL*GET-EEKIHVDIFEN*VIDTSN*LVSVCYSPDFEKLKPKYLEDLCEKMKLFSTFWGR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1828 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1828 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000053802 retrocopies
Callithrix jacchus ENSCJAG000000031681 retrocopy
Erinaceus europaeus ENSEEUG000000142111 retrocopy
Echinops telfairi ENSETEG000000058172 retrocopies
Homo sapiens ENSG000001342021 retrocopy
Microcebus murinus ENSMICG000000051851 retrocopy
Macaca mulatta ENSMMUG000000080292 retrocopies
Monodelphis domestica ENSMODG000000018991 retrocopy
Mus musculus ENSMUSG000000040322 retrocopies
Nomascus leucogenys ENSNLEG000000033021 retrocopy
Pan troglodytes ENSPTRG000000010632 retrocopies
Rattus norvegicus ENSRNOG000000470341 retrocopy
Sus scrofa ENSSSCG000000068212 retrocopies
Tarsius syrichta ENSTSYG000000067361 retrocopy
Tursiops truncatus ENSTTRG000000037461 retrocopy
Tursiops truncatus ENSTTRG00000009682 1 retrocopy
retro_ttru_1828 ,



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