RetrogeneDB ID: | retro_ttru_1907 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_98275:28962..29691(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSTTRG00000004934 | ||
Aliases: | None | ||
Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
Percent Identity: | 86.07 % |
Parental protein coverage: | 74.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPPQLSPALHSWKSSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGFPTSSYDWYKXXXXXXXXXXXXXX |
P.P.LSPALHSWK.SGKFFTYKGLRIFYQDSVGV.GSPEIVVLLH.FPTSSYDWYK.............. | |
Retrocopy | PHPRLSPALHSWKLSGKFFTYKGLRIFYQDSVGV-GSPEIVVLLHSFPTSSYDWYKFWEGVTLRFHRVIA |
Parental | XXXLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDYGDIVAQELLYRFKQNRSGRLTIK |
...LGFGFSDKPRPHHYSIFEQAS.VEALL.HLGLQN.RINLLSH.YGDIVAQELLYRFKQNRSGRLTIK | |
Retrocopy | LDFLGFGFSDKPRPHHYSIFEQASVVEALLQHLGLQNHRINLLSHNYGDIVAQELLYRFKQNRSGRLTIK |
Parental | SLCLSNGGIFPETHRPLLLQKLLKDGGMLSPILTRLMNFFVFSRGLTPVFGPYTRPSESELWDMWAGIRN |
SL..SNGGIFPETHRPLLLQKLLK.GG.LSPILTRLMNFFVFSRGL.PVF.PYTRPSESELWDMWAGIRN | |
Retrocopy | SLSPSNGGIFPETHRPLLLQKLLKAGGVLSPILTRLMNFFVFSRGLIPVFEPYTRPSESELWDMWAGIRN |
Parental | NDGNLVIDSLLQYINQRKKFRRRWVGALASVSIP |
NDGNL.IDSLLQYINQRKKFRR.WVGALASVSIP | |
Retrocopy | NDGNLAIDSLLQYINQRKKFRRWWVGALASVSIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008404 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |