RetrogeneDB ID: | retro_ttru_1918 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_98626:38364..38948(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSTTRG00000009074 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 67.84 % |
Parental protein coverage: | 75.68 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | VREKKKKVPAVPETLKKKRKNFAELRIKR-LRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA |
..EK.KKV.A.P.T.KKK...FAEL.....LRKKFAQKML.KARRKLI.EKAKH..KE.RQMYR.EI... | |
Retrocopy | IEEKGKKVSAMPDTIKKKQRTFAELPARH>LRKKFAQKMLQKARRKLICEKAKHHNKENRQMYRSEI*LG |
Parental | RMARKAGNFYVPAEPKLAFVIRIR-GINGVSPKVRKVLQLLRLRQIFNGTFVKLNKA-SINMLRIVEPYI |
.MARK.GNF.V..EPK.AFV.RIR.GINGVSPK..KV..LL.L.Q...GTFVKL.KA.S.NMLR.VEPY. | |
Retrocopy | KMARKVGNFCVTLEPK*AFVFRIR<GINGVSPKI*KVFHLLYLFQLLSGTFVKLSKA<SVNMLRTVEPYT |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNVLIARSLGKYGIICMEDLIHEIYTVGK |
.W.....KSV.ELIYKRGY.KINKK.I..TDN...ARSLGK..IICMEDLIHE..TVGK | |
Retrocopy | VWDT*K-KSVKELIYKRGYSKINKKVIVPTDNTSTARSLGK*EIICMEDLIHETHTVGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |