RetrogeneDB ID:

retro_ttru_1922

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_98803:101040..101967(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000016693
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1922
TGCGAGTTGAGATTGTTGATTCATCAGAGTCTGGCTGGAGGAATTATTGGAGTCAAAGGTGCTAAAATCAAAGAACTTCG
AGAGAACACTCAGACAACAATCAAGCTTTTCCAGGAATGTGGTCCTCAATCCGCTGACAGAGTGGTTCTTATTGGAGGAA
AACCTGATAGGGTTGTAGAGTGCATGAAGATCATCCTTGATCTTATATCAGAGTCTCCCATCGAAGGACGTGCTCAGCCT
TATGATCCCAGTTTTTATGACGAAACCTATGATTACTGTGGTTTTACAATGATGTTTGATAACTGCTGTGGACGTCCCAT
GGGATTTCCCATGCAGGGAAGAGGTGGTTTTGACAGAACGTCTCCTGGTCAGGGTGGGAGTCCCATGCTTCCATCCAGAA
GAGATTGTGATGATAGGAGCCCTCGTCGAGGACCTCCTCCACCTCCTCCTGGACGAGGGGGCCGGGGTGGTGGCAGAGCT
CAGAATCTTCCTCCTTCTCCACCACCACCACCTAGAGGAGGGGATCTAATGGCCTATGACAGAAGAGGAAGACCTGGAGA
CCATTATGATGGCATGGGTGGTTTCAGTGCTGATGAAACCTGCAACTCTGCAGTAGATACATGGAGCCCATCAGAGCCAC
AGATGGCTTATGAACCACAGAGTGGCTCTGGATATGATTATTCTTATGCAGGGGGTCATGGCTCATATGGTGATCTTGGT
GGACCTATTATTACTACACAAGCAACTGCTCCCAAAGATCTGGCTCGATCTATTACTGGCAAAGGTGGTCAGCAGATTAA
ACAAATCCGTCATGAGTCAGGAGCATCGATCAAAATTGATGAGCCTTTAGAAGGGTCCAAAGATTGGATCATTACCATTA
CAGGAACACAGGCCCAGATACAGAATGCACAGGATTTGCTGCAGAAC

ORF - retro_ttru_1922 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.38 %
Parental protein coverage: 68.21 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLIS
CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC.PQS.DRVVLIGGKPDRVVEC.KIILDLIS
RetrocopyCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECGPQSADRVVLIGGKPDRVVECMKIILDLIS
ParentalESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMS
ESPI.GRAQPYDP.FYDETYDY.GFTMMFD...GRP.GFPM.GRGGFDR..PG.GG.PM.PSRRD.DD.S
RetrocopyESPIEGRAQPYDPSFYDETYDYCGFTMMFDNCCGRPMGFPMQGRGGFDRTSPGQGGSPMLPSRRDCDDRS
ParentalPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSP
PRRGPPPPPPGRGGRGG.RA.NLP..PPPPPRGGDLMAYDRRGRPGD.YDGM.GFSADET..SA.DTWSP
RetrocopyPRRGPPPPPPGRGGRGGGRAQNLPPSPPPPPRGGDLMAYDRRGRPGDHYDGMGGFSADETCNSAVDTWSP
ParentalSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKID
SE.QMAYEPQ.GSGYDYSYAGG.GSYGDLGGPIITTQ.T.PKDLA.SI.GKGGQ.IKQIRHESGASIKID
RetrocopySEPQMAYEPQSGSGYDYSYAGGHGSYGDLGGPIITTQATAPKDLARSITGKGGQQIKQIRHESGASIKID
ParentalEPLEGSEDRIITITGTQDQIQNAQYLLQN
EPLEGS.D.IITITGTQ.QIQNAQ.LLQN
RetrocopyEPLEGSKDWIITITGTQAQIQNAQDLLQN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1922 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1922 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 51 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000211312 retrocopies
Choloepus hoffmanni ENSCHOG000000108322 retrocopies
Dasypus novemcinctus ENSDNOG000000000264 retrocopies
Dipodomys ordii ENSDORG000000160241 retrocopy
Homo sapiens ENSG000001651193 retrocopies
Gorilla gorilla ENSGGOG000000155002 retrocopies
Loxodonta africana ENSLAFG000000265671 retrocopy
Macropus eugenii ENSMEUG000000069753 retrocopies
Microcebus murinus ENSMICG000000157803 retrocopies
Myotis lucifugus ENSMLUG000000058712 retrocopies
Macaca mulatta ENSMMUG000000188711 retrocopy
Monodelphis domestica ENSMODG000000084021 retrocopy
Mus musculus ENSMUSG000000215462 retrocopies
Nomascus leucogenys ENSNLEG000000034863 retrocopies
Otolemur garnettii ENSOGAG000000074783 retrocopies
Pongo abelii ENSPPYG000000193273 retrocopies
Sarcophilus harrisii ENSSHAG000000171091 retrocopy
Sus scrofa ENSSSCG000000227601 retrocopy
Tupaia belangeri ENSTBEG000000012891 retrocopy
Tarsius syrichta ENSTSYG000000011963 retrocopies
Tursiops truncatus ENSTTRG000000049061 retrocopy
Tursiops truncatus ENSTTRG000000150751 retrocopy
Tursiops truncatus ENSTTRG00000016693 7 retrocopies



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