RetrogeneDB ID: retro_ttru_1944

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_99720:30262..30547(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000013728
• Aliases: None
• Description: None

Sequence

>retro_ttru_1944
CCTCGGGGGCCCGGGCTCCCTCCGCTCCGCCATGGCCCCCCGCCGCTGGGCAGGCCCCCGAGGTTGCCGCCGCTGCTGCT
GCTGCTGAGCATCGGGCTGCTGGGCGCCCAGGCCCATGCGGAACCCACCACCGGGAGCGCCGTCCCCGCGCAGAGCCACC
AGTGGATGGACTGCCATGCTTTCGAGTTCATGCAGCGCGCAGGGCAGGACCTGCGGAAGACGGCCTACAGTCTAGACGCG
CGGACGGAGACCCTCCTGCTGCAGGCCCAGCGTCGGCCCCTGTGT

Alignment

ORF - retro_ttru_1944 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.49 %
• Parental protein coverage: 77.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PRAPGLPPLAMAPSPPCRPPRSPPPLLLLVLLSVALLGAQARAEPAAGSAVPAQSRPCVDCHAFEFMQRA
          PR.PGLPPL...P.P..RPPR.PP...LL.LLS..LLGAQA.AEP..GSAVPAQS....DCHAFEFMQRA
Retrocopy PRGPGLPPLRHGPPPLGRPPRLPP---LLLLLSIGLLGAQAHAEPTTGSAVPAQSHQWMDCHAFEFMQRA

Parental  LQDLRKTACSLDARTETLLLQAERRALC
          .QDLRKTA.SLDARTETLLLQA.RR.LC
Retrocopy GQDLRKTAYSLDARTETLLLQAQRRPLC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1944 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1944 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000031277	1 retrocopy	retro_ogar_2799,
Tursiops truncatus	ENSTTRG00000013728	1 retrocopy	retro_ttru_1944 ,