RetrogeneDB ID: | retro_ttru_1947 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_99968:9598..10168(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTTRG00000016157 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.68 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGV |
FRT.GNLHLHKLDE.DCLVKGLLYIDSVSFNGQAECYYFA.ASEPERCQKMPFNL.DP.PLLVV.IGSGV | |
Retrocopy | FRTVGNLHLHKLDEPDCLVKGLLYIDSVSFNGQAECYYFAKASEPERCQKMPFNLADP*PLLVVIIGSGV |
Parental | SILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYERFGLP |
SILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKG.STQADKLVRDIY.GD.ERFGL. | |
Retrocopy | SILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGESTQADKLVRDIYRGDFERFGLS |
Parental | GWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARMCAVNEKI |
GWAVASSFGNMIYK.KRESV.KEDLARATLVTITNNIGSVARMCAVNEKI | |
Retrocopy | GWAVASSFGNMIYKKKRESVGKEDLARATLVTITNNIGSVARMCAVNEKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011633 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000120137 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004947 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004896 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016024 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017509 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016157 | 3 retrocopies |
retro_ttru_1947 , retro_ttru_29, retro_ttru_994,
|