RetrogeneDB ID:

retro_ttru_202

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1550:62556..62821(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS16
Ensembl ID:ENSTTRG00000003571
Aliases:None
Description:ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]


Retrocopy-Parental alignment summary:






>retro_ttru_202
ATGCTGCCCAAGGGTCCGCTGCAGTCTGTGCAGGTCTCGGGAAGCAGGAAGGTGACCACAGCCCTGGCACAGCACAAAGA
GCTAACTGTTTCACCAAGGTGAACAGTGGCCCCTGGAGATGACTGAGCTGCTTGCTCTGCAATGTATGCTCCTGGAACCT
GTCCTGTTCCTGTGGAGAGCGCGGCTCCCCTGCGTGGACATCCGTGCTTGTGTGAAGGGTGGCCCACATTTCTGCAACCT
GCTAGCCCATCTCCAAAGCTCTGGT

ORF - retro_ttru_202 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.65 %
Parental protein coverage: 58.17 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMPAKGPLQSVQVFGRKKTATAVAHCK-RGNGLIKVNGRP-LEMIEPRTLQYKLLEPVLLLGKERFAGVDI
M..KGPLQSVQV.G..K..TA.A..K.R.N...KVN..P.LEM.E...LQ..LLEPVL.L...R...VDI
RetrocopyMLPKGPLQSVQVSGSRKVTTALAQHK<RANCFTKVNSGP<LEMTELLALQCMLLEPVLFLWRARLPCVDI
ParentalRVRVKGGGHVTQIYGESQELG
R..VKGG.H........Q..G
RetrocopyRACVKGGPHFCNLLAHLQSSG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_202 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_202 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 81 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000141761 retrocopy
Bos taurus ENSBTAG000000210933 retrocopies
Callithrix jacchus ENSCJAG000000141706 retrocopies
Cavia porcellus ENSCPOG000000113593 retrocopies
Dasypus novemcinctus ENSDNOG000000015273 retrocopies
Echinops telfairi ENSETEG000000152904 retrocopies
Felis catus ENSFCAG000000107434 retrocopies
Gorilla gorilla ENSGGOG0000001441410 retrocopies
Macropus eugenii ENSMEUG000000103802 retrocopies
Microcebus murinus ENSMICG000000061104 retrocopies
Macaca mulatta ENSMMUG000000193708 retrocopies
Nomascus leucogenys ENSNLEG000000143883 retrocopies
Otolemur garnettii ENSOGAG000000044974 retrocopies
Oreochromis niloticus ENSONIG000000000061 retrocopy
Pelodiscus sinensis ENSPSIG000000169301 retrocopy
Pan troglodytes ENSPTRG0000001097011 retrocopies
Rattus norvegicus ENSRNOG000000195783 retrocopies
Sorex araneus ENSSARG000000008521 retrocopy
Sus scrofa ENSSSCG000000107121 retrocopy
Sus scrofa ENSSSCG000000208173 retrocopies
Tarsius syrichta ENSTSYG000000052414 retrocopies
Tursiops truncatus ENSTTRG00000003571 1 retrocopy
retro_ttru_202 ,



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