RetrogeneDB ID: | retro_ttru_21 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2244:125104..125710(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000007370 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EPCAM | ||
Ensembl ID: | ENSTTRG00000004235 | ||
Aliases: | None | ||
Description: | epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529] |
Percent Identity: | 51. % |
Parental protein coverage: | 66.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | STCWCVNTAGVRRTDK-DSEISCSEPVRTFWIIIELKHKRE-KPYDVQSLQAALKEVITSRYQLDPKYIT |
S.CWCVN..GVRRTDK.D....C.E.VRT..I.I.L.............L.A........RY.L.PK... | |
Retrocopy | SVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRRRPAVRAFNHSDLDAEVRRLFWERYLLHPKFVA |
Parental | NILYENDVIVIDLVQNSSQKTQNDVDIADVAYYFEKDVKDESLFQSNK-MDLRVNGELLDLDPSRTSIYY |
...YE...I.I.L.QN.SQK...DVDIAD.AYYFE.D.K.ESLF......D.RV.GE.L.L...RT.IYY | |
Retrocopy | AVHYEHPTIQIELQQNASQKVAGDVDIADAAYYFERDIKGESLFPGHSGLDVRVRGEPLLLE--RTLIYY |
Parental | VDEKPPEFSMQGLQAGIIAVIVVVAVAITAGIAVLVVSRKKRMAKYEKAEIKEMGEMHRE |
.DEK.P.FSM..L..G.IAVIVVV.V...AG.AVLV........KY.K.EIKE.GEM..E | |
Retrocopy | LDEKSPQFSMKRLTSGLIAVIVVVLVSLVAGVAVLVITNRRKLGKYKKVEIKELGEMRKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006474 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013834 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000624 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011799 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009462 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015074 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012390 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000045394 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004301 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000015680 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011902 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015667 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008429 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008631 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004235 | 2 retrocopies |
retro_ttru_21 , retro_ttru_394,
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