RetrogeneDB ID:

retro_ttru_257

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1708:135312..135558(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFA4
Ensembl ID:ENSTTRG00000013045
Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687]


Retrocopy-Parental alignment summary:






>retro_ttru_257
GTGCTCCACCAGATCATTGGTCAGGCCAAGAATCATCCTAGCTTGATCCCCCTCTTCGTATTTATTGGAGCAGGAGGTAC
TGGAGGAGCACTCTATGTCTGGAGCCTGGCATTGTTCAACCCAGATGTCAGTTGGGACAGAAAGAATAACCCAGAACCCT
GGAACAAAGTGGGCTCCAATGATTAATACAAGTTCTACCCAGTGAATGTAGATTACAGCAAAGTGAAGAAAGAAGGTCCA
GACTTC

ORF - retro_ttru_257 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.93 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMIRQIIGQAKKHPSLIPLFLFIGAGGTGAALYVLRLALFNPDVSWDKKNNPEPWNKLGPNDQYKFYSVNV
...QIIGQAK.HPSLIPLF.FIGAGGTG.ALYV..LALFNPDVSWD.KNNPEPWNK.G.ND.YKFY.VNV
RetrocopyVLHQIIGQAKNHPSLIPLFVFIGAGGTGGALYVWSLALFNPDVSWDRKNNPEPWNKVGSND*YKFYPVNV
ParentalDYSKLKKEGPDF
DYSK.KKEGPDF
RetrocopyDYSKVKKEGPDF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_257 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_257 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 123 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000249310 retrocopies
Bos taurus ENSBTAG000000111457 retrocopies
Callithrix jacchus ENSCJAG000000007483 retrocopies
Equus caballus ENSECAG000000269871 retrocopy
Felis catus ENSFCAG000000247904 retrocopies
Gorilla gorilla ENSGGOG000000014373 retrocopies
Myotis lucifugus ENSMLUG000000064706 retrocopies
Macaca mulatta ENSMMUG000000208942 retrocopies
Monodelphis domestica ENSMODG000000141072 retrocopies
Mustela putorius furoENSMPUG000000141528 retrocopies
Mus musculus ENSMUSG000000296324 retrocopies
Oryctolagus cuniculus ENSOCUG000000293721 retrocopy
Otolemur garnettii ENSOGAG0000000035817 retrocopies
Ochotona princeps ENSOPRG000000141863 retrocopies
Pongo abelii ENSPPYG000000177805 retrocopies
Pteropus vampyrus ENSPVAG000000066605 retrocopies
Rattus norvegicus ENSRNOG000000055123 retrocopies
Sorex araneus ENSSARG000000111258 retrocopies
Sus scrofa ENSSSCG000000243136 retrocopies
Tupaia belangeri ENSTBEG0000001662916 retrocopies
Tursiops truncatus ENSTTRG00000013045 8 retrocopies
Vicugna pacos ENSVPAG000000100031 retrocopy



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