RetrogeneDB ID:

retro_ttru_258

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1714:141374..141654(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000003666
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_258
ATGCAGAAGGACTCCGGCCCACTGGTGCCTTTGCGTTGGATTGGCTTTGGCTGTGTAGCACTGGTTGCTTCCGGCGGGAT
CATTGGCTGTGCAAAAGCAGCAGTGTCCCGTCCCTGGCTGCCAGGCTCCCCTTGGGTGGATTAGTGGGCCTGCGTGCCTA
TCAGCTGTCTCAGGATCCAAGGAACATTTGGGTTTTCTTAGTTACATCTGGAACCTTGGCTGGCATTACGGGACGAGATT
CTACCACTCTGGAAGATGTATGCTTGCAGCCTTAAATGCA

ORF - retro_ttru_258 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.26 %
Parental protein coverage: 82.61 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMEKDSGPLVPIHWIGFGYAALVASGGIIGYARA-GSVPSLAAGLLFGGLAGLGAYQLSQDPRNIWLFLAV
M.KDSGPLVP..WIGFG..ALVASGGIIG.A.A..SVPSLAA.L..GGL.GL.AYQLSQDPRNIW.FL.V
RetrocopyMQKDSGPLVPLRWIGFGCVALVASGGIIGCAKA<SSVPSLAARLPLGGLVGLRAYQLSQDPRNIWVFL-V
ParentalTSGTLAGI-MGMRFYHSGKFMPAGLIA
TSGTLAGI..G.RFYHSG..M.A.L.A
RetrocopyTSGTLAGI<YGTRFYHSGRCMLAALNA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_258 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_258 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000026143 retrocopies
Bos taurus ENSBTAG000000058081 retrocopy
Canis familiaris ENSCAFG000000096922 retrocopies
Callithrix jacchus ENSCJAG000000049571 retrocopy
Dasypus novemcinctus ENSDNOG000000077326 retrocopies
Equus caballus ENSECAG000000269941 retrocopy
Erinaceus europaeus ENSEEUG000000090001 retrocopy
Felis catus ENSFCAG000000141785 retrocopies
Homo sapiens ENSG000001118432 retrocopies
Homo sapiens ENSG000001372101 retrocopy
Gorilla gorilla ENSGGOG000000097021 retrocopy
Loxodonta africana ENSLAFG000000097952 retrocopies
Macropus eugenii ENSMEUG000000002101 retrocopy
Macaca mulatta ENSMMUG000000187882 retrocopies
Mustela putorius furoENSMPUG000000006132 retrocopies
Mus musculus ENSMUSG000000213612 retrocopies
Nomascus leucogenys ENSNLEG000000005643 retrocopies
Oryctolagus cuniculus ENSOCUG000000163683 retrocopies
Otolemur garnettii ENSOGAG000000121653 retrocopies
Ochotona princeps ENSOPRG000000143664 retrocopies
Pongo abelii ENSPPYG000000162251 retrocopy
Pan troglodytes ENSPTRG000000177202 retrocopies
Rattus norvegicus ENSRNOG000000154372 retrocopies
Sarcophilus harrisii ENSSHAG000000114561 retrocopy
Sus scrofa ENSSSCG000000010383 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000228331 retrocopy
Tursiops truncatus ENSTTRG00000003666 2 retrocopies
retro_ttru_1504, retro_ttru_258 ,
Tursiops truncatus ENSTTRG000000152371 retrocopy



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