RetrogeneDB ID:

retro_ttru_27

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_115370:11982..12573(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTTRG00000005690
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RHOA
Ensembl ID:ENSTTRG00000017370
Aliases:None
Description:ras homolog family member A [Source:HGNC Symbol;Acc:667]


Retrocopy-Parental alignment summary:






>retro_ttru_27
ATGGCGGCCATCCGTAAGAAGCTGGTGGTGGTGGGCGACGGCGCGTGCGGCAAGACGTGCCTGCTGATCGTGTTCAGTAA
GGACGAGTTCCCCGAGGTGTACGTGCCCACCGTATTCGAGAACTATGTGGCCGACATCGAGGTGGACGGCAAGCAGGTGG
AGCTGGCGCTGTGGGACACGGCGGGCCAGGAGGACTACGACCGCCTGCGGCCACTCTCCTACCCGGACACCGACGTGATC
CTCATGTGCTTCTCGGTGGACAGCCCGGATTCGCTGGAGAACATCCCCGAGAAGTGGGTGCCCGAGGTGAAGCACTTCTG
CCCTAATGTGCCCATCATCCTGGTGGCCAACAAGAAAGACCTACGCAGCGACGAGCACGTCCGCACAGAGCTGGCGCGCA
TGAAGCAGGAACCGGTGCGCACGGATGACGGCCGCGCCATGGCCGTGCGCATCCAAGCCTACGACTACCTCGAGTGCTCG
GCCAAGACCAAGGAGGGCGTGCGCGAGGTCTTCGAGACGGCCACGCGCGCCGCGCTGCAGAAGCGCTACGGCTCCCAGAA
CGGCTGCATCAACTGCTGCAAGGTGCTATGA

ORF - retro_ttru_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.34 %
Parental protein coverage: 98.96 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR
MAAIRKKLV.VGDGACGKTCLLIVFSKD.FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR
RetrocopyMAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR
ParentalPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK
PLSYPDTDVILMCFS.DSPDSLENIPEKW.PEVKHFCPNVPIILV.NKKDLR.DEH.R.ELA.MKQEPV.
RetrocopyPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVR
ParentalPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCL
...GR.MA.RI.A..Y.ECSAKTK.GVREVFE.ATRAALQ.R.G....GC.
RetrocopyTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG-SQNGCI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_27 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_27 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000082971 retrocopy
Anas platyrhynchos ENSAPLG000000146871 retrocopy
Canis familiaris ENSCAFG000000230662 retrocopies
Callithrix jacchus ENSCJAG000000039043 retrocopies
Cavia porcellus ENSCPOG000000140731 retrocopy
Dipodomys ordii ENSDORG000000033823 retrocopies
Homo sapiens ENSG000000675602 retrocopies
Gasterosteus aculeatus ENSGACG000000056701 retrocopy
Gallus gallus ENSGALG000000038061 retrocopy
Gadus morhua ENSGMOG000000081881 retrocopy
Latimeria chalumnae ENSLACG000000169411 retrocopy
Meleagris gallopavo ENSMGAG000000022801 retrocopy
Macaca mulatta ENSMMUG000000129621 retrocopy
Monodelphis domestica ENSMODG000000129812 retrocopies
Mustela putorius furoENSMPUG000000138405 retrocopies
Mus musculus ENSMUSG000000078159 retrocopies
Ornithorhynchus anatinus ENSOANG000000138071 retrocopy
Oreochromis niloticus ENSONIG000000188841 retrocopy
Ochotona princeps ENSOPRG000000096381 retrocopy
Pelodiscus sinensis ENSPSIG000000153281 retrocopy
Rattus norvegicus ENSRNOG000000505193 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000045612 retrocopies
Takifugu rubripes ENSTRUG000000119441 retrocopy
Tursiops truncatus ENSTTRG00000017370 2 retrocopies
retro_ttru_27 , retro_ttru_339,



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