RetrogeneDB ID:

retro_ttru_297

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1800:4381..4950(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL48
Ensembl ID:ENSTTRG00000005403
Aliases:None
Description:mitochondrial ribosomal protein L48 [Source:HGNC Symbol;Acc:16653]


Retrocopy-Parental alignment summary:






>retro_ttru_297
CTCTTGAGGTTCAGAACTTCAAGAGAGAATCCCATCTGTTCTGCAGGTGGCATTCTGCTGAGCACCAGTCGGCACTACAG
GTCACAGCCCACGCGCGGCATTGGAAGATGCAAGCACCTAGTTAAAGCACAAGAGCCCAAGAAGAAGAGGGGAAAGTGGA
AGTGAGACCTATTAATTCGGGGACAGATGATGAATATGGGGTTTGAAACATTCACCTGACTGCATATGATATGGCCCTGG
CAGAGAGTTATGCCCAATATGTTCACAACCTCTGCAACCATCTCTCCATTAAAGTCGAGGAAAGTTATGTGAGGCCCACC
AAAACCATGGAGGTGTTGCAGTTGCAGAACCAAGGCAGCAAAATGCTCCTGGACTCAGTTCTTACCACCCATGCGTGAGT
GGTTCAGATCAGTGGTTTGAGCGCTACATTTGCAGAGATTTTCTTGGAAATAATCCAAAGCAATCGTCCTGAAGGAGTCA
AACTGTCAGTGAGGGAGCACACTGAAGAAGACTTCAAGGGAAGGTTCAAAGCCCAGCCAGAACAGGAAGAACTGTTAGCC
AAGTTGAAC

ORF - retro_ttru_297 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.96 %
Parental protein coverage: 99.48 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLIMFRTSGENPICSAAGILLSISRHYRSQPTHGIGRYKHLVKAQEPKKKRGK-VEVRPINLGTDYEYGVL
L..FRTS.ENPICSA.GILLS.SRHYRSQPT.GIGR.KHLVKAQEPKKKRGK.VEVRPIN.GTD.EYGV.
RetrocopyLLRFRTSRENPICSAGGILLSTSRHYRSQPTRGIGRCKHLVKAQEPKKKRGK<VEVRPINSGTDDEYGV*
ParentalNIHLIAYDMALAESYAQYVHNLCNHLSIKVEESYAMPTKTVEVLQLQDQGRKMLLDSVLTTHERVVQISG
NIHL.AYDMALAESYAQYVHNLCNHLSIKVEESY..PTKT.EVLQLQ.QG.KMLLDSVLTTH..VVQISG
RetrocopyNIHLTAYDMALAESYAQYVHNLCNHLSIKVEESYVRPTKTMEVLQLQNQGSKMLLDSVLTTHA*VVQISG
ParentalLSATFAEIFLEIIQSNLPEGVKLSVKEHTEEDFKGRFKARPELEELLAKLN
LSATFAEIFLEIIQSN.PEGVKLSV.EHTEEDFKGRFKA.PE.EELLAKLN
RetrocopyLSATFAEIFLEIIQSNRPEGVKLSVREHTEEDFKGRFKAQPEQEELLAKLN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_297 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_297 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000055851 retrocopy
Homo sapiens ENSG000001755811 retrocopy
Mustela putorius furoENSMPUG000000097161 retrocopy
Mus musculus ENSMUSG000000307062 retrocopies
Nomascus leucogenys ENSNLEG000000170971 retrocopy
Oryctolagus cuniculus ENSOCUG000000093021 retrocopy
Otolemur garnettii ENSOGAG000000047711 retrocopy
Pan troglodytes ENSPTRG000000040491 retrocopy
Tursiops truncatus ENSTTRG00000005403 2 retrocopies
retro_ttru_1123, retro_ttru_297 ,
Vicugna pacos ENSVPAG000000046571 retrocopy



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