RetrogeneDB ID: | retro_ttru_301 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1810:170557..171129(+) | ||
Located in intron of: | ENSTTRG00000000894 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSTTRG00000001616 | ||
Aliases: | None | ||
Description: | ribosomal protein S7 [Source:HGNC Symbol;Acc:10440] |
Percent Identity: | 79.69 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SSSAIVKP-GEKPDXXXXXXXXALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIF-VPVPQLKSF |
SS..I.KP.G.KPD.........LL.LEMN..LKAQLRELNI....EIEVGGGRKAIII..VP.PQLKSF | |
Retrocopy | SSVKIAKPSGVKPDEFELGISQVLLKLEMNLYLKAQLRELNIMTTEEIEVGGGRKAIIIL<VPIPQLKSF |
Parental | QKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGK |
QK....LV.ELEKKFS.KH.VFI.QRRILPKPT.KSRTKNKQK.PRS.TLTAVHDAILEDLVFPSEIVGK | |
Retrocopy | QKNLGLLVCELEKKFSEKHLVFITQRRILPKPTCKSRTKNKQKHPRSCTLTAVHDAILEDLVFPSEIVGK |
Parental | RIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
RIRVKL.GS.LIKVHLDKAQQNNVEHKV.TFSGVYKKLTGKD.NFEFPEFQL | |
Retrocopy | RIRVKLVGSQLIKVHLDKAQQNNVEHKVGTFSGVYKKLTGKDINFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016462 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013285 | 14 retrocopies | |
Equus caballus | ENSECAG00000020253 | 2 retrocopies | |
Felis catus | ENSFCAG00000023243 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023095 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011870 | 7 retrocopies | |
Mus musculus | ENSMUSG00000061477 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015407 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008507 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025872 | 12 retrocopies | |
Pan troglodytes | ENSPTRG00000011615 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002071 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000008551 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000027353 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024830 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001616 | 6 retrocopies |