RetrogeneDB ID: retro_ttru_38

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_10:97649..98263(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL5
• Ensembl ID: ENSTTRG00000002154
• Aliases: None
• Description: methyltransferase like 5 [Source:HGNC Symbol;Acc:25006]

Sequence

>retro_ttru_38
AGGCTTAGGGAACTAGACAGTCACCTGCAACAAGTGGATGGATTCGAAAAGTCCAAGCTCCTTCTAGAACAGCATCCAAC
CAGGCCGCACATTGCAGCATGTATGCTCTATACAATTCATAACACACATGATGACATTGAAAATAAAGTGGTTACAGATC
TAGGATGTGGCTGTGGAGTGCTTAGCATCGGAACTGCAATGCTGGGAGCAGGGTTGTGTGTTGGATTTGACATAGATGAA
GATGCACTGGAAATATTTAATAGGAATGTAGAAGAGCCTGAGTTAACAAATGTTGACATGGTTCAGTGTGATGTGTGCTC
ATTATCTAACAGAATGTCCAAGTCATTCGATACAGTAATTATGAATCCTCCCTTCGGGACCAAAAATAATAAAGGGACAG
ATATGGCCTTTCTGAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCTTTACACAAATCCTCACTAGAGAACATA
TTCAAAAGAAAGTTGCAGAACAGAAAATCAAGATAGATATTATTGCGGAGCTAAGATATGACCTGCTGGCATCATACAAG
TTTCATAAAAGAAAATCGGTGGACATTGAAGTGGACCTAATTTGGTTTTCTTTT

Alignment

ORF - retro_ttru_38 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.2 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGTAMLGA
          .L.EL.S.LQQVDGFEK.KLLLEQ.PTRPHIAACMLYTIHNT.DDIENKVV.DLGCGCGVLSIGTAMLGA
Retrocopy RLRELDSHLQQVDGFEKSKLLLEQHPTRPHIAACMLYTIHNTHDDIENKVVTDLGCGCGVLSIGTAMLGA

Parental  GLCVGFDIDEDALEIFNRNVEEFELTNVDMVQCDVCSLSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKT
          GLCVGFDIDEDALEIFNRNVEE.ELTNVDMVQCDVCSLSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKT
Retrocopy GLCVGFDIDEDALEIFNRNVEEPELTNVDMVQCDVCSLSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKT

Parental  ALEMARTAVYSLHKSS-TREHIQKKAAEWKIKIDIIAELRYDLPASYKFHKRKSVDIEVDLIRFSF
          ALEMARTAVYSLHKSS.TREHIQKK.AE.KIKIDIIAELRYDL.ASYKFHKRKSVDIEVDLI.FSF
Retrocopy ALEMARTAVYSLHKSS<TREHIQKKVAEQKIKIDIIAELRYDLLASYKFHKRKSVDIEVDLIWFSF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_38 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_38 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012438	1 retrocopy	retro_cfam_1726,
Callithrix jacchus	ENSCJAG00000006777	2 retrocopies	retro_cjac_2282, retro_cjac_729,
Dasypus novemcinctus	ENSDNOG00000013460	2 retrocopies	retro_dnov_1043, retro_dnov_773,
Gorilla gorilla	ENSGGOG00000022484	2 retrocopies	retro_ggor_1064, retro_ggor_2032,
Loxodonta africana	ENSLAFG00000018044	2 retrocopies	retro_lafr_1213, retro_lafr_864,
Tursiops truncatus	ENSTTRG00000002154	2 retrocopies	retro_ttru_251, retro_ttru_38 ,