RetrogeneDB ID: retro_ttru_380

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2078:43376..43761(+)
• Located in intron of: ENSTTRG00000007760

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF122
• Ensembl ID: ENSTTRG00000012999
• Aliases: None
• Description: ring finger protein 122 [Source:HGNC Symbol;Acc:21147]

Sequence

>retro_ttru_380
ATGCACCCATTCCAGTGGTGTAATGGGTTTTTCTGCGGCCTGGGACTGGTGAGCACCAACAAGTCCTGCTCGATGCCACC
CATCAGTTTCCAAGACCTTCCCCTCAACATCTACATGGTCATCTTCGGCACAGACATCTTTGTCTTCATACTCAGCCTCA
TCTTCTGCTGCTATTTTATCAGCAAACTCTGGAACCAGGCACAGAGCAAACGATATGGATATAAAGTTGTGATGCTTAAA
GGTGACGCCAAGAAGTTACAGTTATATGGGCAGACCTGTACAGTCTGTCTGGAAGACTCCAAGGGGAAGGATGAGCAGGT
GTGCTCTCATGCCAACATGCCATTCACCACAAGTGTCTGGTGAGTGGCTGGAAGTACGCTGTCTG

Alignment

ORF - retro_ttru_380 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.79 %
• Parental protein coverage: 83.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSE
          MHPFQWCNG.FCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGT.IFVF.LSLIFCCYFISKL.NQAQS.
Retrocopy MHPFQWCNGFFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTDIFVFILSLIFCCYFISKLWNQAQSK

Parental  RYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDE-LGVLSCQHAFHRKCLV-KWLEVRCV
          RYGYK.V.LKGDAKKLQLYGQTC.VCLED.KGKDE..GVLSCQHA.H.KCLV..WLEVRC.
Retrocopy RYGYKVVMLKGDAKKLQLYGQTCTVCLEDSKGKDE<AGVLSCQHAIHHKCLV<EWLEVRCL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_380 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_380 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000012999	1 retrocopy	retro_ttru_380 ,