RetrogeneDB ID: | retro_ttru_461 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_236:322024..322744(+) | ||
Located in intron of: | ENSTTRG00000003481 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTTRG00000001353 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 88.84 % |
Parental protein coverage: | 76.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | VNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNH |
.N.NDTKEDVF.HQTA.K..NPRKYLRSVGDGETVEFDVVEGEK.AEAANVTGPGGVP.QGS..AAD.NH | |
Retrocopy | INGNDTKEDVFAHQTAVK--NPRKYLRSVGDGETVEFDVVEGEKDAEAANVTGPGGVPAQGSQCAADHNH |
Parental | YRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ |
YR..PRRRGPPRNY.QNYQ.SESGEKN.GSESAPEGQAQ.RRPYRRRR.PPY..RRPYGRRPQYSNPPVQ | |
Retrocopy | YRCSPRRRGPPRNYHQNYQISESGEKNGGSESAPEGQAQ*RRPYRRRRCPPYCVRRPYGRRPQYSNPPVQ |
Parental | GEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRN |
GEVM.GADNQGAGEQGRPVRQNMYRGYRPRFRRGPPR.RQP.EDGNEEDKENQGDETQGQQPP.RRYRRN | |
Retrocopy | GEVM*GADNQGAGEQGRPVRQNMYRGYRPRFRRGPPR*RQPGEDGNEEDKENQGDETQGQQPPERRYRRN |
Parental | FNYRRRRPENPKPQDGKETKAA-DPPAENSSA |
FNYRRRRPENPKPQ.G.ETKAA.DPPAENSSA | |
Retrocopy | FNYRRRRPENPKPQGGEETKAADDPPAENSSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |