RetrogeneDB ID: retro_ttru_505

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2510:102434..104056(+)
• Located in intron of: ENSTTRG00000001017

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZCCHC7
• Ensembl ID: ENSTTRG00000006054
• Aliases: None
• Description: zinc finger, CCHC domain containing 7 [Source:HGNC Symbol;Acc:26209]

Sequence

>retro_ttru_505
ATGATGTTTGGTGGTTATGAGACCATAGAAGCATATGAAGATGACCTTTATCGTGAAGAGTCATCTAGTGAACTGAGTGT
TGATAGTGAGGTGGAATTTCAGCTCTACAGCCAAGTTCATTATGCCCAAGATCTTGATAATGTCATCAAAGAGGAAGAAC
ATGAAGAGAAGAACTCTGGGAATTCTGAATCATTCAATAGTAAACCAAATCAGAAGAACTTAATTATCCTTTCAGATAGT
GAGGTCATCCAGCTATCAGATGGGTCAGAGGTCATCACACTGTCTGATGAAGATAGTATTTATAAATGTAAAAGAAAGAA
TTTTAGAGTCCATGCAGAAGAAAGGACCCAAGGTCCTCCTGCTTTTCTTCATTCTAATGAGTTGGCAGATAAGAAATGCA
AGAGGGATATTGAGAAGACTAAACCTGGAGAGAGATCAGGTACAATCCAAGAGGTCATGATTATAGAGGTCAGTTCAAGT
GAAGAGGAAGAGAGCACCATTTCAGAAAGCGATAATGTGGAAAGCTGGATGCTGCTGGGATGTGAAGTTGATGATAAAGA
TGACGATATCCTTCTCAATCTTGTGGGGTGTGAAAATTCTCTTAATGAAGGAGAAGATGGTGTAAACTGGTTCATCAGTG
ACAAAGACATTGAGGCACAGATAGGTAAAAAAAGAACATCTGGAAGATGGACCCACCGATACTATTCAGTCAACAAAAAC
GTTACCTGTAGAAATTGTGACAAATGTGGCCATTTGTCAAAAAACTGCCCCTTTCCACAAAAAGTCCGCTCCTGTTGCCT
CTGCTCCGAGAGAGGACACCTCCAGTATGCCTGTCCGGCCCGCTTTTGCTTAGACTGTTCTTTGCCTATGTCTTCTACTC
ACAGATGTCTTGAAAGACCTTCCTGGAGAAAACGGTGATGACAGATGTGACATGATAGGCCACTATGCTGATGCTTGCCC
AGAAATCTGGAGGCAGTATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCAAAGACCCTTCTGGAAAATCAGCTTA
GTGTATTGCTACAACTGCGGGCAAGAAGGCCATTACGGACATGAATGTACAGAAAGACGAATGTTTAGCCAGACCTTTCC
AACATCTCCATTCATCTACTACTATGATGACAAATATGAAATCCGGGAGAGAGATCAGAGAATAAAACGAAAAGTGAAAG
AACTTCAGAAGAATGGGGACTTTCCAAGGCAGTTCAAGAGGCCTCATATGGAAGCAGCAGATAAGAGGCCCCACCGTGAT
ATGAGGAAGAGCCATGCCTCATGGAGAAGTAACACGTGGCCTCAAGAAAAGAAAGAAACCCAAAAAGAAGCCATGAACAG
GACCAGCAGAGAGCGTGAGAAGCACAGGAAGGCTGACAGGTGTCATGAAGTGGATGAGGACTACCCCAGGGGCCCCAAAG
TCCACTTTTCTCCTGGCACTGTCAAAACCCAGAAGCCTCACAAGCCCTTTCACCACTCATTGCATTACCACAAGCCAAGA
GAAGACAGGCTGCCCAGAGAGGGCAAGAGGGTCAGGCGTAAGAAAAAAGAGAGCTGTTTGGAGGATGATGGCAATGATAA
TTTATTTCTCATTAAGCAGAGG

Alignment

ORF - retro_ttru_505 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.59 %
• Parental protein coverage: 99.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MMFGGYETIEAYEDDLYREESSSELSVDSEVEFQLYSQVHYAQDLDNVIKEEEHEEKNSGNSESLNSKPN
          MMFGGYETIEAYEDDLYREESSSELSVDSEVEFQLYSQVHYAQDLDNVIKEEEHEEKNSGNSES.NSKPN
Retrocopy MMFGGYETIEAYEDDLYREESSSELSVDSEVEFQLYSQVHYAQDLDNVIKEEEHEEKNSGNSESFNSKPN

Parental  QKNLIILSDSEVIQLSDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGPPAFLHSNELADKKCKRDIEKT
          QKNLIILSDSEVIQLSDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGPPAFLHSNELADKKCKRDIEKT
Retrocopy QKNLIILSDSEVIQLSDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGPPAFLHSNELADKKCKRDIEKT

Parental  KPGERSGTIQEVMIIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNW
          KPGERSGTIQEVMIIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNW
Retrocopy KPGERSGTIQEVMIIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNW

Parental  FISDKDIEAQIGKKRTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP---KVRSCCLCSERGHLQYACPA
          FISDKDIEAQIGKKRTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP...KVRSCCLCSERGHLQYACPA
Retrocopy FISDKDIEAQIGKKRTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCPFPQKVRSCCLCSERGHLQYACPA

Parental  RFCLDCSLPMSSTHRCLERPSWRKR-CDRCDMIGHYADXXXXXXXXXXXXTKPGPPKKPKT-PSGQSA-L
          RFCLDCSLPMSSTHRCLERPSWRKR..DRCDMIGHYAD............TKPGPPKKPKT.PSG.SA.L
Retrocopy RFCLDCSLPMSSTHRCLERPSWRKR>DDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKT<PSGKSA<L

Parental  VYCYNCGQEGHYGHECTERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHM
          VYCYNCGQEGHYGHECTERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHM
Retrocopy VYCYNCGQEGHYGHECTERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHM

Parental  EAADKRPHRDMRKSHASWRSNTWPQEKKETQKEAMNRTSREREKHRKADKCHEVDEDYPRGPKVHFSPGT
          EAADKRPHRDMRKSHASWRSNTWPQEKKETQKEAMNRTSREREKHRKAD.CHEVDEDYPRGPKVHFSPGT
Retrocopy EAADKRPHRDMRKSHASWRSNTWPQEKKETQKEAMNRTSREREKHRKADRCHEVDEDYPRGPKVHFSPGT

Parental  VKTQKPHKPFHHSLHYHKPREDRLPREGRRVRHKKKESCLEDDGNDNLFLIKQR
          VKTQKPHKPFHHSLHYHKPREDRLPREG.RVR.KKKESCLEDDGNDNLFLIKQR
Retrocopy VKTQKPHKPFHHSLHYHKPREDRLPREGKRVRRKKKESCLEDDGNDNLFLIKQR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_505 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_505 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147905	1 retrocopy	retro_hsap_1342,
Macaca mulatta	ENSMMUG00000007421	1 retrocopy	retro_mmul_2180,
Pongo abelii	ENSPPYG00000029763	1 retrocopy	retro_pabe_1114,
Pan troglodytes	ENSPTRG00000020939	2 retrocopies	retro_ptro_2962, retro_ptro_917,
Tursiops truncatus	ENSTTRG00000006054	2 retrocopies	retro_ttru_1606, retro_ttru_505 ,