RetrogeneDB ID:

retro_ttru_523

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2576:175614..177000(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EEF1A1
Ensembl ID:ENSTTRG00000000114
Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]


Retrocopy-Parental alignment summary:






>retro_ttru_523
ATGGGAAAGGAGAAGACCCACATCAACATCGTTGTCATTGGACACGTAGATTCGGGGAAGTCCACCCCTACTGGCCATCT
GATCTACAAATGTGGTGGGATCCACAAGAGAACCATTGAAAAGTTCGAGAAGGAGGCTGCCGAGATGGGGAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGACAAACTGAAAGCTGAACGCGAGCGTGGTATCACCATTGATATCTCCCTATGGAAGTTCG
AGAGCAGCAAGTACTATGTGACCATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAATATGATTACAGGCACATCC
CAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGGATTTGAAGCAGGTATTTCCGAGAATGGGCAGACCCG
TGAGCATGCCCTTCTGGCCTACACTCTGGGTGTGAAACAGCTAATTGCTGGAGTTAACAAAATGGATTCCACCGAGCCAC
CCTACAGCCAGAAGAGATACGAGGAAATTGTAAAAGAAGTCAGCACCTACATTAAGAAAGTTGGCTACAACCCCGACACA
GTAGCATTTGTGCCAATTTCTGGCTGGAACCGTGAAAACATGCTGGAGCCAAGTGCTAACGTGCCGTGGTTCAAGGGATG
GAGAGTCACCCGTAAAGATGGCAACGACAGAGGAACCACACTGCTTGAAGCTCTGGATTGCATCCTGCCACCAACTCACC
CAACTGACAGACCCATGCGTTTGCCCCTCCAGGACGTCTACAAAATTGGTGGTATTGGCACTGTCCCTGTGGGTCGAGTG
GAGACTGGTATTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAACGCGACAACTGAAGTGAAGTCTGTTGAAAT
GCACCATGAAGCTTTGAGTGAAGCCCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAACGTGTCTGTCAAAGATGTTC
GTCGTGGCAATGTGGCTGGTGACAGCAAGAATGACCCACCGATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCTTG
AACCATCCAGGCCAAGTCAGTGCTGGCTGTGCACCTGTGCTGGATTGTCACACAGCTCACATTGCCTGCACGTTTGCTGA
GCTGAAGGAGAAGATTGATCGTCGTTCTGGGAAAAAGCTGGAAGATGGCCCCAAATTCTTAAAATCTGCTGATGCTGCCA
TCTTTAATATGGTTCCTGGGCAAACCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCACTTTGCTGTTCA
TGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCAGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAA

ORF - retro_ttru_523 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.75 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL-DKLKAERER
MGKEKTHINIVVIGHVDSGKST.TGHLIYKCGGI.KRTIEKFEKEAAEMGKGSFKYAWVL.DKLKAERER
RetrocopyMGKEKTHINIVVIGHVDSGKSTPTGHLIYKCGGIHKRTIEKFEKEAAEMGKGSFKYAWVL<DKLKAERER
ParentalGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL
GITIDISLWKFE.SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVG.FEAGIS.NGQTREHALL
RetrocopyGITIDISLWKFESSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGGFEAGISENGQTREHALL
ParentalAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP
AYTLGVKQLI.GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK.GYNPDTVAFVPISGWN..NMLEPSAN.P
RetrocopyAYTLGVKQLIAGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKVGYNPDTVAFVPISGWNRENMLEPSANVP
ParentalWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVT
WFKGW.VTRKDGN..GTTLLEALDCILPPT.PTD.P.RLPLQDVYKIGGIGTVPVGRVETG.LKPGMVVT
RetrocopyWFKGWRVTRKDGNDRGTTLLEALDCILPPTHPTDRPMRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVT
ParentalFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNH
FAPVN.TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNH
RetrocopyFAPVNATTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNH
ParentalPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVP-GKPMCVESFSDY
PGQ.SAG.APVLDCHTAHIAC.FAELKEKIDRRSGKKLEDGPKFLKS.DAAI..MVP.GKPMCVESFSDY
RetrocopyPGQVSAGCAPVLDCHTAHIACTFAELKEKIDRRSGKKLEDGPKFLKSADAAIFNMVP>GKPMCVESFSDY
ParentalPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQRAK
PPLG.FAV.DMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQ.AK
RetrocopyPPLGHFAVHDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_523 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_523 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 127 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000145343 retrocopies
Canis familiaris ENSCAFG000000132491 retrocopy
Equus caballus ENSECAG000000203632 retrocopies
Equus caballus ENSECAG000000222601 retrocopy
Felis catus ENSFCAG0000003097714 retrocopies
Homo sapiens ENSG0000015650827 retrocopies
Loxodonta africana ENSLAFG000000280811 retrocopy
Myotis lucifugus ENSMLUG0000001353724 retrocopies
Monodelphis domestica ENSMODG000000185334 retrocopies
Mustela putorius furoENSMPUG000000038166 retrocopies
Mustela putorius furoENSMPUG0000000427110 retrocopies
Oryctolagus cuniculus ENSOCUG000000084813 retrocopies
Ochotona princeps ENSOPRG000000166856 retrocopies
Sus scrofa ENSSSCG000000044894 retrocopies
Tursiops truncatus ENSTTRG00000000114 19 retrocopies
Tursiops truncatus ENSTTRG000000018351 retrocopy
Drosophila melanogaster FBgn00005571 retrocopy



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