RetrogeneDB ID: | retro_ttru_54 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1054:228322..228732(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSTTRG00000005708 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 50.35 % |
Parental protein coverage: | 89.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE-ITHHCP |
D..A.....G.EP..LG.FDT.GQ..Y..LRPL..PQ....LVCFSV..PS.F....E..V.....HHCP | |
Retrocopy | DLCAGAARVGREPFALGHFDTTGQDGYNKLRPLTSPQIGASLVCFSV--PSVFI*KSEREVDT<LKHHCP |
Parental | KTPFLLVGTQIDLR-DDPSTIEKLAKNKQKPITPET-AEKLARDLKAVKYVECSALTQRGLKNVFDEAIL |
KTPFL.VGT.IDLR...P.T.E.LAK.KQK..T.ET...K....LKAV.......LTQ..LK.V.D...L | |
Retrocopy | KTPFLPVGTNIDLR>GPPNT-ETLAKDKQKSVTLET<TLKSRCSLKAVACGDYFVLTQKDLKSVSDKTLL |
Parental | AAL |
..L | |
Retrocopy | ISL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000010374 | 3 retrocopies | |
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tursiops truncatus | ENSTTRG00000001099 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000005708 | 2 retrocopies |
retro_ttru_118, retro_ttru_54 ,
|
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |