RetrogeneDB ID:

retro_ttru_559

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2680:27078..27474(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS12
Ensembl ID:ENSTTRG00000000609
Aliases:None
Description:ribosomal protein S12 [Source:HGNC Symbol;Acc:10385]


Retrocopy-Parental alignment summary:






>retro_ttru_559
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTCTGCAAGAGGTGCTGAAGACCGCCCTCAC
CCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTCTGCGTGCTTGCAT
CCAACTGTGATGAGCCTATGTGTGTCAAGTTAGTGGAGGCCCTTTGTGCTGAGCACCAAATCAACCTGATTAAGGTTGAT
GACAACAAGAAGCTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGAAAACCCCGTAAGGTGGTTGGCTGCAG
CTGTTCGGTGGTTAAGGACTATGGCAAAGAGTCTCAGGCCGAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAA

ORF - retro_ttru_559 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.97 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCA
MAEEGIAAGGVMDVNTALQEVLKTAL.HDGLARGIREAAKALDKRQAHLCVLASNCDEPM.VKLVEALCA
RetrocopyMAEEGIAAGGVMDVNTALQEVLKTALTHDGLARGIREAAKALDKRQAHLCVLASNCDEPMCVKLVEALCA
ParentalEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSC.VVKDYGKESQA.DVIEEYFKCKK
RetrocopyEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCSVVKDYGKESQAEDVIEEYFKCKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_559 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_559 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 196 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000104791 retrocopy
Ailuropoda melanoleuca ENSAMEG000000080152 retrocopies
Bos taurus ENSBTAG000000013607 retrocopies
Callithrix jacchus ENSCJAG0000000286534 retrocopies
Cavia porcellus ENSCPOG000000004294 retrocopies
Equus caballus ENSECAG000000015998 retrocopies
Echinops telfairi ENSETEG0000000685414 retrocopies
Felis catus ENSFCAG000000284027 retrocopies
Homo sapiens ENSG0000011230626 retrocopies
Gorilla gorilla ENSGGOG0000001223422 retrocopies
Gadus morhua ENSGMOG000000194551 retrocopy
Microcebus murinus ENSMICG000000052525 retrocopies
Myotis lucifugus ENSMLUG000000011375 retrocopies
Macaca mulatta ENSMMUG000000132371 retrocopy
Monodelphis domestica ENSMODG000000175201 retrocopy
Mustela putorius furoENSMPUG000000147711 retrocopy
Mus musculus ENSMUSG000000619831 retrocopy
Nomascus leucogenys ENSNLEG000000146114 retrocopies
Pelodiscus sinensis ENSPSIG000000034571 retrocopy
Rattus norvegicus ENSRNOG000000164115 retrocopies
Sorex araneus ENSSARG000000031702 retrocopies
Sarcophilus harrisii ENSSHAG000000089056 retrocopies
Tarsius syrichta ENSTSYG0000001009724 retrocopies
Tursiops truncatus ENSTTRG00000000609 11 retrocopies
Vicugna pacos ENSVPAG000000115043 retrocopies



Copyright © RetrogeneDB 2014-2017