RetrogeneDB ID:

retro_ttru_612

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2906:335217..335593(-)
Located in intron of:ENSTTRG00000016988
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LEPROT
Ensembl ID:ENSTTRG00000016296
Aliases:None
Description:leptin receptor overlapping transcript [Source:HGNC Symbol;Acc:29477]


Retrocopy-Parental alignment summary:






>retro_ttru_612
CTTGTGGCATTATCCTTCACTGGGGCTATCGGGCTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTACGGTGTTTA
CTGACCCTTGTTTGCCCTGATATTCCACGTCATCTCTCCCATCCCCTATTTTATTGCCAAACGAGCAACATATGACGCCG
ATGCAACAAGTAGTGCCTGTCGGGAACGGACTTATTTTTTCACTACCAGAAGGGTTGTTTCTGCCTTTGGATTTCCTGTT
ATTCTTGCTCAGGTGCCTGTGATCAAATGGGGAGCCTGTGGCCTGGTGCTGGCAGGCAATGCAGTGGTTTTCCTTACAAT
TCAAGGTTTTTTTCCTTATATTTGGAAGAGGAGATGATTTTAGCTGGGAGCAGTGG

ORF - retro_ttru_612 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.89 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPYFIAKRATYDSDATSSACRELAYFFTTG
LVALSF.GAIGLTFLMLGCALEDYGVY.PLF.LIFH.ISPIPYFIAKRATYD.DATSSACRE..YFFTT.
RetrocopyLVALSFTGAIGLTFLMLGCALEDYGVY*PLFALIFHVISPIPYFIAKRATYDADATSSACRERTYFFTTR
ParentalIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQG-FFLVFGRGDDFSWEQW
.VVSAFGFPVILA.V.VIKWGACGLVLAGNAV.FLTIQG.FFL.FGRGDDFSWEQW
RetrocopyRVVSAFGFPVILAQVPVIKWGACGLVLAGNAVVFLTIQG>FFLIFGRGDDFSWEQW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_612 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_612 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Mus musculus ENSMUSG000000352121 retrocopy
Tursiops truncatus ENSTTRG00000016296 1 retrocopy
retro_ttru_612 ,



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