RetrogeneDB ID:

retro_ttru_638

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_295:539586..539949(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000010400
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_638
CCACCCAGAGCCAGTTTAAGAGCTGTTCAGTGATGGTCATGGAAGATAAGAAGGGAGAGAGAGTAGCCGACGGGAAACCA
GGAGGTATCCAAAGGGAGGAAGAAGATGTGAAACGACCCGGGAAAGATGCTACCAAGAAGGGCTAGAGGACAGCTGTGCT
CTTCTAGCCAAGGAGACGATGGGCTGGAAGAAGGCTGTGAGCGAGCACCGAGCAGCAAAAGCTCACCTGAACTCTGCGCT
CGTGAGGACAAAGAACCAGCCCAGGGTCTGCACGTGACAAGTTCTCTGCAGAAGAGCACGGACTTGATGGAGGCCATGCA
GAGTCTTAGGAAGATCTCAGAAATCCAGGCCGCCCTGAGGGAG

ORF - retro_ttru_638 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.4 %
Parental protein coverage: 55.2 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalPEKPPKELVNEWSLKIRKEM-RVVDRQIRDIQREEEKVKRSVKDAAKKG-QKDVCVVLAKEMIRSRKAVS
P.......V..WS.KIR.E..RV.D.....IQREEE.VKR..KDA.KKG...D.C..LAKE.....KAVS
RetrocopyPPRASLRAVQ*WSWKIRRER<RVADGKPGGIQREEEDVKRPGKDATKKG<LEDSCALLAKETMGWKKAVS
ParentalKLYASKAHMNSVLMGMKNQLAV-LRVAGSLQRSTEVMKAMQSLVKIPEIQATMRE
...A.KAH.NS.L...KNQ..V.L.V..SLQ.ST..M.AMQSL.KI.EIQA..RE
RetrocopyEHRAAKAHLNSALVRTKNQPRV<LHVTSSLQKSTDLMEAMQSLRKISEIQAALRE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_638 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_638 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000074791 retrocopy
Callithrix jacchus ENSCJAG000000194062 retrocopies
Cavia porcellus ENSCPOG000000017231 retrocopy
Macropus eugenii ENSMEUG000000091111 retrocopy
Microcebus murinus ENSMICG000000054923 retrocopies
Mus musculus ENSMUSG000000531191 retrocopy
Oryctolagus cuniculus ENSOCUG000000292771 retrocopy
Ochotona princeps ENSOPRG000000021912 retrocopies
Sorex araneus ENSSARG000000089171 retrocopy
Tursiops truncatus ENSTTRG00000010400 1 retrocopy
retro_ttru_638 ,



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