RetrogeneDB ID: | retro_ttru_641 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_296:41570..42073(-) | ||
Located in intron of: | ENSTTRG00000001709 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT1 | ||
Ensembl ID: | ENSTTRG00000009954 | ||
Aliases: | None | ||
Description: | hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 80.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ISDDEPGYDLDLFCIPNH-YAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHHIVALC-VLKGGYKFFAD |
..DDEPGYDLD...IPN..YAEDLEKVFI.HGLIMDR.E.LARDVMKEM.G.H......VLK.GYKFFAD | |
Retrocopy | VNDDEPGYDLDVYGIPNR>YAEDLEKVFILHGLIMDRNEWLARDVMKEM-GGHHIVAL>VLKRGYKFFAD |
Parental | LLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLL |
LLDYIKAL.RNSDRSIPMTVDF.RLKSYC.DQSTGDIKVIGGDDLSTLTGKNVLIVE.IIDTG.T.QTLL | |
Retrocopy | LLDYIKALKRNSDRSIPMTVDFSRLKSYCDDQSTGDIKVIGGDDLSTLTGKNVLIVEGIIDTGRTVQTLL |
Parental | SLVKQHNPKMVKVASLLVKRTPRSVGYRPD |
SLVKQHNPKM.KVASL.VKRTP.SV..RPD | |
Retrocopy | SLVKQHNPKMLKVASLPVKRTPQSVACRPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |