RetrogeneDB ID: | retro_ttru_643 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2961:335398..335841(+) | ||
Located in intron of: | ENSTTRG00000014402 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSTTRG00000004129 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 64.71 % |
Parental protein coverage: | 85.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ITHNPTNATLNKFIEEL-KKYG-VTTVVRVCEATYD-TSLVEKEGIHVLDWPFDDGAPPSNQ-IVDDWLS |
I.HNPT...L....E.L.KKYG..TT.VRVC.A.YD.T.L.EKEGIHVLDWPF..GAPPSN..IVD..L. | |
Retrocopy | IIHNPTQRDLEQSYEKL<KKYG<ITTIVRVCKAMYDDTALMEKEGIHVLDWPFHEGAPPSNL<IVDG*LR |
Parental | LVK-IKFREDPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPK |
LVK.IKF.E.PG...AVH.VA.LG.AP.LVALALI.G.MK.EDAVQ...QK..G.FN.KQLLYLEKY... | |
Retrocopy | LVK<IKFYEEPGYYTAVHRVASLGTAPLLVALALIDGRMKQEDAVQVRKQKQHGDFNIKQLLYLEKYHSQ |
Parental | MRLRFKDSNGHRN |
M.L..KD.NG..N | |
Retrocopy | MCLCCKDFNGQ*N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |