RetrogeneDB ID: | retro_ttru_645 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2967:33372..34253(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSTTRG00000013097 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 81.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGFVKVVKNKAYFKRYQVKRRR-REGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE |
MGFVKVVKNKA.FKRYQVK.RR..EGKTDYYA.K.L.IQDKNKYNT.KYR.IVRVTNR.IICQ.A.ARI. | |
Retrocopy | MGFVKVVKNKAHFKRYQVKLRRWQEGKTDYYAWKQLIIQDKNKYNTRKYRTIVRVTNRAIICQMAHARIQ |
Parental | GDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPG |
GD.IVCAAYAHELP.YGVKVG.TNYAA.YCTGLLLARRLLNR.GMD.IYEGQVEV.GDEYNVESIDGQPG | |
Retrocopy | GDRIVCAAYAHELPTYGVKVGRTNYAAPYCTGLLLARRLLNRLGMDRIYEGQVEVAGDEYNVESIDGQPG |
Parental | AFTCYLDAGLARTTTGNKV-FGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMR |
AFTCYLDAGL.RTTTG.KV.FG...G.V.GG.SIPHSTK.FPGY.SESKEFNA..H.KHI.GQN.ADYM. | |
Retrocopy | AFTCYLDAGLPRTTTGDKV<FG---GPVNGGWSIPHSTKGFPGYGSESKEFNADLHQKHIVGQNGADYMC |
Parental | YLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDR |
.LIE.DEDAY.KQFSQYIKNN.T.DMMEE..KKAH.AIRENPV.EKKP.KEVK..RWN.PKMSLAQKKD. | |
Retrocopy | *LIEGDEDAYRKQFSQYIKNNTTTDMMEEKDKKAHVAIRENPVNEKKPEKEVKERRWNHPKMSLAQKKDT |
Parental | VAQKKASFLRAQERAAES |
VAQK.ASFLR.QERAAE. | |
Retrocopy | VAQKNASFLRCQERAAEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009878 | 5 retrocopies | |
Bos taurus | ENSBTAG00000002026 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000698 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000005674 | 2 retrocopies | |
Equus caballus | ENSECAG00000021065 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006361 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011635 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004150 | 6 retrocopies | |
Mus musculus | ENSMUSG00000058558 | 11 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000004669 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010089 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000002040 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015117 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000023529 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006417 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006899 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000010560 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000013097 | 5 retrocopies |