RetrogeneDB ID:

retro_ttru_688

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3085:107978..108300(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NME4
Ensembl ID:ENSTTRG00000009157
Aliases:None
Description:NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:7852]


Retrocopy-Parental alignment summary:






>retro_ttru_688
GGGCCCGCCTGGGCCTGGAGCGATTCTGGTCAAAGTGAAGCCAGATGGCCTGCAGCAGTGGCTCCTTGCGATTGTGATCC
AGGGCTTTGAGAGCAGGGTCCTCGGGCTGGTGGGGCCAAAGACACTGCAGGCACCAGACAGTGTCTTGGCTGAGGTCTAC
CACTACCAGGAGGAAGCCCTTTTACCCAGCCCTCATCAGCTACATGAGCTCTGGCCCCTGGTCCCTATGGTCTGGCAAGA
CCCCCATGTAGTCTATACCACAAGGGCCATGATAGGAAACAGCAACTCTGCTGAGGTTGCCCCTGGCACCATCAGGGAAG
AC

ORF - retro_ttru_688 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.04 %
Parental protein coverage: 56.48 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalGPSWT-LER-TLVAVKPDGVQRRLVGDVIQRFERRGFKLVGMKMLQAPESILAEHYHNLQR-KPF-YPAL
GP.W..LER..LV.VKPDG.Q..L...VIQ.FE.R...LVG.K.LQAP.S.LAE.YH......PF.YPAL
RetrocopyGPAWA<LER<ILVKVKPDGLQQWLLAIVIQGFESRVLGLVGPKTLQAPDSVLAEVYHYQEE<SPF<YPAL
ParentalISYMSSG-PVVAMVWEGPNVVCTSRAMIGHTNSAEAAPGTIRGD
ISYMSSG.P.V.MVW..P.VV.T.RAMIG..NSAE.APGTIR.D
RetrocopyISYMSSG<PLVPMVWQDPHVVYTTRAMIGNSNSAEVAPGTIRED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_688 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_688 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000070773 retrocopies
Canis familiaris ENSCAFG000000196774 retrocopies
Cavia porcellus ENSCPOG000000064961 retrocopy
Echinops telfairi ENSETEG000000148751 retrocopy
Felis catus ENSFCAG000000083003 retrocopies
Homo sapiens ENSG000001032021 retrocopy
Gorilla gorilla ENSGGOG000000045121 retrocopy
Macropus eugenii ENSMEUG000000054555 retrocopies
Myotis lucifugus ENSMLUG000000100611 retrocopy
Macaca mulatta ENSMMUG000000006121 retrocopy
Mustela putorius furoENSMPUG000000160173 retrocopies
Mus musculus ENSMUSG000000241771 retrocopy
Nomascus leucogenys ENSNLEG000000080681 retrocopy
Otolemur garnettii ENSOGAG000000258081 retrocopy
Pongo abelii ENSPPYG000000069081 retrocopy
Pan troglodytes ENSPTRG000000075411 retrocopy
Rattus norvegicus ENSRNOG000000491521 retrocopy
Sus scrofa ENSSSCG000000079862 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000047981 retrocopy
Tursiops truncatus ENSTTRG000000074331 retrocopy
Tursiops truncatus ENSTTRG00000009157 2 retrocopies
retro_ttru_393, retro_ttru_688 ,
Vicugna pacos ENSVPAG000000103161 retrocopy



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