RetrogeneDB ID:

retro_ttru_702

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_312:95877..96333(+)
Located in intron of:ENSTTRG00000002128
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000003311
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_702
ATGGCCGGGCTGCCCCGCAGGATTATCAAGGAAACCCAGCGTTTGCTGGCAGAGCCAGTTCCCGGCATTAAAGCAGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCTTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGAGCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATT

ORF - retro_ttru_702 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPGLPRQDIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR
M.GLPR..IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR
RetrocopyMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR
ParentalFMTKIYHRNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETA
FMTKIYH.NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETA
RetrocopyFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETA
ParentalRAWTRLYAMNNI
RAWTRLYAMNNI
RetrocopyRAWTRLYAMNNI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_702 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_702 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 62 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000061771 retrocopy
Callithrix jacchus ENSCJAG000000029798 retrocopies
Cavia porcellus ENSCPOG000000085815 retrocopies
Echinops telfairi ENSETEG000000018825 retrocopies
Homo sapiens ENSG000001778893 retrocopies
Loxodonta africana ENSLAFG000000289851 retrocopy
Macropus eugenii ENSMEUG000000029447 retrocopies
Macaca mulatta ENSMMUG000000206343 retrocopies
Monodelphis domestica ENSMODG000000094512 retrocopies
Oryctolagus cuniculus ENSOCUG000000112871 retrocopy
Pongo abelii ENSPPYG000000048324 retrocopies
Pan troglodytes ENSPTRG000000052973 retrocopies
Sarcophilus harrisii ENSSHAG000000077761 retrocopy
Tupaia belangeri ENSTBEG0000001249710 retrocopies
Tarsius syrichta ENSTSYG000000088005 retrocopies
Tursiops truncatus ENSTTRG00000003311 3 retrocopies
retro_ttru_1235, retro_ttru_286, retro_ttru_702 ,



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