RetrogeneDB ID:

retro_ttru_706

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3125:463026..463296(+)
Located in intron of:ENSTTRG00000009432
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BRI3
Ensembl ID:ENSTTRG00000015705
Aliases:None
Description:brain protein I3 [Source:HGNC Symbol;Acc:1109]


Retrocopy-Parental alignment summary:






>retro_ttru_706
GCGCCCTCCCAGCCACCGCCCTACCCCTACCTCCTCACAGGGCTACCCATCCACCACCCCAGGGTCTGCAACATCCACAG
TCGGAATGTCACCCGGCACCCTGCCACTTCCATCGTTGTCGTTGGAGGCTGCCCTGTCTGCAGGCTCGGGGTTCTGGAGG
ACTCCTTCACCTTCCTGGGCATCTTCTTGTCCATCGTTTTGATCCCCTTTGGGTTCATCTGCTGTTTTGCCTTGAGGAAG
CAAAGATGCCCCATCTGTGGAGCAAACTTT

ORF - retro_ttru_706 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.44 %
Parental protein coverage: 72. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAAAPPPPYPYLVTGLPTHHPRVYSIHSRNVTRYPANSIVVVGGCPVCRVGVLEDSFTFLGIFLAIVLFPF
A...PPPYPYL.TGLP.HHPRV..IHSRNVTR.PA.SIVVVGGCPVCR.GVLEDSFTFLGIFL.IVL.PF
RetrocopyAPSQPPPYPYLLTGLPIHHPRVCNIHSRNVTRHPATSIVVVGGCPVCRLGVLEDSFTFLGIFLSIVLIPF
ParentalGFICCFALRKRRCPNCGANF
GFICCFALRK.RCP.CGANF
RetrocopyGFICCFALRKQRCPICGANF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_706 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_706 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000152271 retrocopy
Homo sapiens ENSG000001647133 retrocopies
Gorilla gorilla ENSGGOG000000096461 retrocopy
Microcebus murinus ENSMICG000000028881 retrocopy
Macaca mulatta ENSMMUG000000132752 retrocopies
Otolemur garnettii ENSOGAG000000006381 retrocopy
Pongo abelii ENSPPYG000000258153 retrocopies
Pan troglodytes ENSPTRG000000194361 retrocopy
Tursiops truncatus ENSTTRG00000015705 2 retrocopies
retro_ttru_706 , retro_ttru_91,



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